y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000225641 |
Family | CBM22 |
Protein Properties | Length: 947 Molecular Weight: 104645 Isoelectric Point: 6.22 |
Chromosome | Chromosome/Scaffold: 021050213 Start: 17515 End: 22609 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 223 | 369 | 2.2e-27 |
NIILNPKFEDALNNWSGRGCKIVLHDSMGDGKIVPQSGKVFAAATERTQSWNGIQQDITGRVQRKLAYEATTVVKIFGNNVTTADVRATLWVQSPNQREQ YIGIAKLLSFSPSLSNEIATDKDWTQLQGKFLLNGSPSKIVVYLEGP | |||
CBM22 | 62 | 188 | 1.2e-31 |
NIVLNHDFSGGLHSWHPNHCNAFVVDSAGSYAVVTNRQQCWQGLEQDITERISPGFTYSVSACVGVSGPLQGSAEVMATLKLESRGSATGYVKIGRCTVS KGRWGNLDGKFSVSTKPDRVVFYLEGP | |||
CBM22 | 404 | 545 | 6.00036e-42 |
NIIENSNLSNGTNGWFPLGNCTLSVRTGSPHVLPPMAIESLGPHEPLSGCYILVTKRTETWMGPAQMIGDKLKLFLTYQVSAWVRIGAGATGPQNVNIAL GVDNQWVNGGQVEASDTRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 598 | 870 | 0 |
LVKVKQSQNSFPIGTCISRTNTDNEDFVDFFVKNFNWAVFGNELKWYWTEPQQGNFNYKDADDMVDLCKNHNIEXRGHCIFWEVIDTVQQWIRTLSQSDL STAVQNRLTDLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTANLLDPSATLFVNDYHIEDGCDTRSSPEKYIDQILDLQEQGAPVGGIGIQG HIDSPVGPIVCSALDKLGILGLPIWFTELDVSSTNEYVRADDLEVILREAFANPAVEGVMLWGFWELFMSREN |
Full Sequence |
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Protein Sequence Length: 947 Download |
MRRLIPWRFR SGVSDDSNHQ KQKHPKGSKE TMEKNQQTNN SAADSVEFSS ENVADSSSHG 60 PNIVLNHDFS GGLHSWHPNH CNAFVVDSAG SYAVVTNRQQ CWQGLEQDIT ERISPGFTYS 120 VSACVGVSGP LQGSAEVMAT LKLESRGSAT GYVKIGRCTV SKGRWGNLDG KFSVSTKPDR 180 VVFYLEGPSV GVDLIIKSVL ICSSSPSECQ SGRTGNFNDG EENIILNPKF EDALNNWSGR 240 GCKIVLHDSM GDGKIVPQSG KVFAAATERT QSWNGIQQDI TGRVQRKLAY EATTVVKIFG 300 NNVTTADVRA TLWVQSPNQR EQYIGIAKLL SFSPSLSNEI ATDKDWTQLQ GKFLLNGSPS 360 KIVVYLEGPP AGTDILVNSF VVKHAEKALP SPPPVIELPA FGVNIIENSN LSNGTNGWFP 420 LGNCTLSVRT GSPHVLPPMA IESLGPHEPL SGCYILVTKR TETWMGPAQM IGDKLKLFLT 480 YQVSAWVRIG AGATGPQNVN IALGVDNQWV NGGQVEASDT RWHEIGGSFR IEKQPSKVMV 540 YIQGPAAGVD LMVAGLQIFP VDRPARFRHL KRQTDKIRKC DIVLKFSGSD SSSMLGSLVK 600 VKQSQNSFPI GTCISRTNTD NEDFVDFFVK NFNWAVFGNE LKWYWTEPQQ GNFNYKDADD 660 MVDLCKNHNI EXRGHCIFWE VIDTVQQWIR TLSQSDLSTA VQNRLTDLLT RYKGKFRHYD 720 VNNEMLHGSF YQDRLGKDIR ANMFKTANLL DPSATLFVND YHIEDGCDTR SSPEKYIDQI 780 LDLQEQGAPV GGIGIQGHID SPVGPIVCSA LDKLGILGLP IWFTELDVSS TNEYVRADDL 840 EVILREAFAN PAVEGVMLWG FWELFMSREN SHLVNAEGDI NEAGKRYLAL KEEWLSEAHG 900 HIDEQGEFRF RGFPGAYSVE IVTASKKPVK TFVVDKGESP VEVSIAL 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-15 | 403 | 547 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-16 | 62 | 189 | 134 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 1.0e-32 | 620 | 861 | 266 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 2.0e-77 | 641 | 886 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 2.0e-78 | 606 | 891 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 37 | 947 | 4 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 0.00000000002 | 43 | 201 | 487 | 660 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 50 | 947 | 151 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 62 | 553 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 222 | 558 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-29 | 631 | 860 | 39 | 268 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 1i1w_A | 2e-29 | 631 | 860 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 9e-29 | 631 | 860 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 2e-28 | 639 | 860 | 47 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
PDB | 1gor_A | 2e-28 | 639 | 860 | 47 | 268 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO900972 | 260 | 656 | 915 | 0 |
EX570690 | 294 | 654 | 947 | 0 |
EX570691 | 281 | 654 | 934 | 0 |
EL428755 | 279 | 608 | 886 | 0 |
EB442796 | 298 | 431 | 728 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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