| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000233331 |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 45392.3 Isoelectric Point: 10.2907 |
| Chromosome | Chromosome/Scaffold: 001655638 Start: 5578 End: 7500 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 122 | 323 | 0 |
| KKWITFQRDMRIKLDKPLLISSFTAIDGRGANIHIAGNACLTVFKASNIIIHGLRIHHCRSQPPSSVMGPDGKPFPVGQVDGDAVRLITASKVWIDHNTF YECEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGYVRDKNMRVTLVYNHFGPNCNQRMPRIRYGYAHVVNNLYRKWSQYAIGGSMNPSVKSEANLF IA | |||
| Full Sequence |
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| Protein Sequence Length: 407 Download |
| MEKLHAPAMN GEFIAGSRLS FPWRPTEHTT AXVTLLSTTP HPSFAEKSSK SAANXIDSCW 60 RWNSNWASNR QELALCSVGF AGKMTNNVGS HVTFYQVTDP SDNALHPNPG TLRYGATMIK 120 GKKWITFQRD MRIKLDKPLL ISSFTAIDGR GANIHIAGNA CLTVFKASNI IIHGLRIHHC 180 RSQPPSSVMG PDGKPFPVGQ VDGDAVRLIT ASKVWIDHNT FYECEDGLLD VTRGSTDITI 240 SNNWFRDQDK VMLLGHDDGY VRDKNMRVTL VYNHFGPNCN QRMPRIRYGY AHVVNNLYRK 300 WSQYAIGGSM NPSVKSEANL FIAPKRGNKE VTWRKVSNSI GSKSSWKFRS VGDIFENEAS 360 FLQTSLPVAG VMPQYKRIQS FLVAHAKAVR SLTRSSGALK CTKTSRC |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-28 | 63 | 321 | 271 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-57 | 143 | 321 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-68 | 130 | 325 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 84 | 407 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 48 | 407 | 14 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 54 | 407 | 2 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 54 | 407 | 2 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 33 | 331 | 14 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 54 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 54 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 128 | 323 | 61 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-16 | 139 | 321 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-16 | 146 | 357 | 82 | 286 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 255 | 54 | 301 | 0 |
| DT575750 | 228 | 175 | 402 | 0 |
| FD757999 | 225 | 137 | 361 | 0 |
| FG606120 | 323 | 49 | 365 | 0 |
| HO778688 | 365 | 49 | 407 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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