| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000252413 |
| Family | CBM53 |
| Protein Properties | Length: 1023 Molecular Weight: 116758 Isoelectric Point: 5.9866 |
| Chromosome | Chromosome/Scaffold: 015836244 Start: 3089 End: 9014 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 204 | 287 | 1.8e-26 |
| QDIEVFLXXSISTLSNEPEVQMMGAFNDWRWKXFTFRLNKTQLKGDWWSCRFHVPKESYKINFVFFNGQNVYDNNDAKDFYITV | |||
| CBM53 | 380 | 468 | 3.7e-33 |
| LVKLYYNRSSGPLXHAKELWXHGGHNGWMDGLSIVERLVSSERKDGDWWYANVVVPEQAVVLDWVFADGPPQNAVLYDNNHRHDFHAIV | |||
| GT5 | 662 | 857 | 7.00649e-45 |
| MNIVGGLGDVVTSLSRAVQDLNHHVKEFQYNRSFSWGGTEIKVWFGKVEGISVYFLEPQNRFFYAGCVYGCKNDAERFGFFCRAALEFLLQSGFHPDIIH CHDWSSAPVAWLFKDHYMHYGLSKARVVFTIHNLEFGTHFIGKAVASSDKSTTVSNTYAKEVSGNPAIAPHLYKFHGIINGIDQDIWDPYNDKFIP | |||
| GT5 | 858 | 1018 | 0 |
| VVLLGSAPDPRIQNDFVNLANQLHSSHGDRARLCLTYDEPLSHLIYSGADFILVPSIFEPCGLTQLIAMRYGSIPVVRKTGGLYDTVFDVDHDEERADAQ GVEPNGFSFDGADAAGVYYALNRAISAWFDGRDWFNSLCKTVMEQDWSWNKPALDYMELYR | |||
| Full Sequence |
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| Protein Sequence Length: 1023 Download |
| MVLLFQSGFK GNLANGVSYQ ITASSADFSR RRQRKVSPGS KGLVPKNPVG TSXQKTNQRN 60 IGDEKGITSS TSSELAGKNK KTLESRVDTR RELVVEPSEE SXVEEKRIDE TSSKVEESSS 120 VSKPSGRGGX QGIENXSVGK VLDDLADTDK GIDTSEKLTN EVSLKLKLER EEKLRKEEIX 180 RLAEENFSSG YKIFVYPQVX KPDQDIEVFL XXSISTLSNE PEVQMMGAFN DWRWKXFTFR 240 LNKTQLKGDW WSCRFHVPKE SYKINFVFFN GQNVYDNNDA KDFYITVEGG MDLFAFEDFL 300 LEEKRKEQEK LAKERAERER QAEEQRRIEA EKAASEADRA QAKAEIXKRR QMVQELIKKA 360 VRSVEDVWHI EPREFNGEDL VKLYYNRSSG PLXHAKELWX HGGHNGWMDG LSIVERLVSS 420 ERKDGDWWYA NVVVPEQAVV LDWVFADGPP QNAVLYDNNH RHDFHAIVPK SIPEELYWVE 480 EEHQIYKKLQ EERRLKEEAI RAKAERTARM KAEMKERILK RFLLSQKHIV YTEPLDVQAG 540 NKATVFYXPA NTVLNGKPEV WFRGSFNRWT HXKGPLQSQK MLPAENGSHV KTTGEFEFIC 600 TFQGLNFLVD MCICVXTVPV PLDAYMMDFV FSETEDGGLF DNNNGMDYHI PVFGGVAKEP 660 PMNIVGGLGD VVTSLSRAVQ DLNHHVKEFQ YNRSFSWGGT EIKVWFGKVE GISVYFLEPQ 720 NRFFYAGCVY GCKNDAERFG FFCRAALEFL LQSGFHPDII HCHDWSSAPV AWLFKDHYMH 780 YGLSKARVVF TIHNLEFGTH FIGKAVASSD KSTTVSNTYA KEVSGNPAIA PHLYKFHGII 840 NGIDQDIWDP YNDKFIPVVL LGSAPDPRIQ NDFVNLANQL HSSHGDRARL CLTYDEPLSH 900 LIYSGADFIL VPSIFEPCGL TQLIAMRYGS IPVVRKTGGL YDTVFDVDHD EERADAQGVE 960 PNGFSFDGAD AAGVYYALNR AISAWFDGRD WFNSLCKTVM EQDWSWNKPA LDYMELYRAA 1020 RKE |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-60 | 858 | 1018 | 161 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| COG0297 | GlgA | 2.0e-72 | 665 | 1021 | 478 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PLN02939 | PLN02939 | 6.0e-75 | 657 | 1020 | 487 | + transferase, transferring glycosyl groups | ||
| PLN02316 | PLN02316 | 5.0e-113 | 858 | 1022 | 165 | + synthase/transferase | ||
| PLN02316 | PLN02316 | 0 | 37 | 858 | 849 | + synthase/transferase | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0.00000004 | 26 | 208 | 61 | 242 | starch synthase III precursor [Solanum lycopersicum] |
| GenBank | ACT09059.1 | 0 | 144 | 1022 | 286 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| DDBJ | BAF49176.1 | 0 | 24 | 1022 | 56 | 1163 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAB40374.1 | 0 | 24 | 1022 | 40 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002518476.1 | 0 | 38 | 1022 | 9 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 9e-26 | 733 | 1010 | 119 | 501 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3vue_A | 9e-26 | 733 | 1010 | 119 | 501 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 1rzv_B | 2e-24 | 882 | 1017 | 342 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_B | 0.000001 | 754 | 856 | 128 | 261 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 2e-24 | 882 | 1017 | 342 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 699 | 187 | 858 | 0 |
| HO794758 | 592 | 520 | 1022 | 0 |
| GO840562 | 350 | 519 | 841 | 0 |
| HO794758 | 111 | 187 | 291 | 0.45 |
| HO794758 | 133 | 345 | 475 | 2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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