y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000711911 |
Family | CBM13 |
Protein Properties | Length: 549 Molecular Weight: 61186.7 Isoelectric Point: 5.9038 |
Chromosome | Chromosome/Scaffold: 001580138 Start: 2554 End: 4200 |
Description | |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM13 | 430 | 544 | 8.2e-22 |
GYNDMCLTANDDKSRVWMEYCVPSKNQQQWALYSEGTIRVNSDRTLCVTSNGHNSSNVIIILKCELKRGDQRWVFKTDGSILNPNAELVMDVKNSDVYLR QIILYPYYGTPNQQW | |||
CBM13 | 291 | 419 | 2.1e-24 |
VQNRTTHISGLEGLCVDVKNGLDSDGNLVQIWPCGQQRNQKWTFQPDETIRSMEKCMTAYSTSSPENYVMIYNCTTAVLEATKWALSTDGTITHRRSGLV LTAHEATRGTTLTIATNSHSPKQGWRVAD |
Full Sequence |
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Protein Sequence Length: 549 Download |
MTRVLAIYIT LAFSLFLCGT ECNISFSTSG ATSNSYNTFI KALRAQLTNG ATAIYDIPVL 60 NPSVPDSQRF LLVDLSNNGN NTITVAIDVV NXSVVAYRAR AARPYFLADA PDEALDXLFN 120 DTRGFFLPFT SNYXDLEKAA EKSRDKIPLG LTPLHNAITS LWNHESEEAA VSLLVIIQTV 180 FEAARFRVIE QRVRNSISSK ANFIPDPAML SLENNWLAIS WETQHALNGV FSKSIQLRST 240 NNNLFLVDSV SSSIMAGVAF LFYNCVTFPN IIKMPVNVVM GKEIDNEICA VQNRTTHISG 300 LEGLCVDVKN GLDSDGNLVQ IWPCGQQRNQ KWTFQPDETI RSMEKCMTAY STSSPENYVM 360 IYNCTTAVLE ATKWALSTDG TITHRRSGLV LTAHEATRGT TLTIATNSHS PKQGWRVADD 420 VEPTVTSIIG YNDMCLTAND DKSRVWMEYC VPSKNQQQWA LYSEGTIRVN SDRTLCVTSN 480 GHNSSNVIII LKCELKRGDQ RWVFKTDGSI LNPNAELVMD VKNSDVYLRQ IILYPYYGTP 540 NQQWLPFF* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00161 | RICIN | 1.0e-5 | 465 | 544 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
cd00161 | RICIN | 7.0e-7 | 380 | 504 | 130 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
cd00161 | RICIN | 2.0e-21 | 297 | 415 | 123 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
cd00161 | RICIN | 6.0e-27 | 428 | 545 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
pfam00161 | RIP | 1.0e-58 | 25 | 226 | 207 | + Ribosome inactivating protein. |
Gene Ontology | |
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GO Term | Description |
GO:0017148 | negative regulation of translation |
GO:0030598 | rRNA N-glycosylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC15886.1 | 0 | 24 | 545 | 31 | 557 | ribosome inactivating protein precursor [Sambucus nigra] |
GenBank | AAC49672.1 | 0 | 23 | 545 | 32 | 559 | precursor ribosome inactivating protein [Sambucus nigra] |
GenBank | AAC49673.1 | 0 | 3 | 545 | 2 | 560 | precursor ribosome inactivating protein [Sambucus nigra] |
GenBank | AAC49989.1 | 0 | 23 | 545 | 36 | 564 | type 2 ribosome-inactivating protein SNAIf precursor [Sambucus nigra] |
GenBank | AAN05009.1 | 0 | 33 | 545 | 54 | 578 | ribosome-inactivating protein [Binary vector pGV4945] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2vlc_B | 0 | 24 | 548 | 26 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
PDB | 2vlc_A | 0 | 24 | 548 | 26 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
PDB | 3cah_A | 0 | 295 | 545 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
PDB | 3ca6_A | 0 | 295 | 545 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
PDB | 3ca5_A | 0 | 295 | 545 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |