| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000832246 |
| Family | PL1 |
| Protein Properties | Length: 157 Molecular Weight: 17420.5 Isoelectric Point: 4.8268 |
| Chromosome | Chromosome/Scaffold: 01869977 Start: 30471 End: 31073 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 73 | 151 | 8e-28 |
| ERGELDSDDISLFSAHKIWIDHCSLSFCADGLIDVIMRSTGITISNNYFAHHNEVMLLGVNDKYLPDSVMQVTIAFNHF | |||
| Full Sequence |
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| Protein Sequence Length: 157 Download |
| MEGNHTVTRL NHLDQSPLSA RKSNWERVWI VDGSRRVYVS GGETELLAKE NGGHCSGLGG 60 WRELEEVSEF EAERGELDSD DISLFSAHKI WIDHCSLSFC ADGLIDVIMR STGITISNNY 120 FAHHNEVMLL GVNDKYLPDS VMQVTIAFNH FGVALV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-13 | 80 | 151 | 82 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-24 | 70 | 151 | 90 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-27 | 78 | 152 | 84 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAV44092.1 | 2e-33 | 78 | 156 | 121 | 199 | hypothetical protein [Oryza sativa Japonica Group] |
| GenBank | EEC67092.1 | 2e-33 | 74 | 156 | 217 | 299 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
| RefSeq | XP_002268818.1 | 8e-35 | 74 | 156 | 214 | 296 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311060.1 | 2e-33 | 73 | 156 | 218 | 301 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 1e-34 | 74 | 156 | 214 | 296 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-21 | 78 | 152 | 149 | 223 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-21 | 78 | 152 | 149 | 223 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000001 | 76 | 151 | 113 | 191 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0003 | 64 | 151 | 169 | 279 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2qx3_B | 0.005 | 74 | 151 | 108 | 201 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| Hydropathy |
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