| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr2g100040.1 |
| Family | GH28 |
| Protein Properties | Length: 363 Molecular Weight: 39847 Isoelectric Point: 6.6001 |
| Chromosome | Chromosome/Scaffold: 2 Start: 31798465 End: 31800172 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 47 | 188 | 1.6e-27 |
| KEACASTSSSKILIPKGTYKLKQVNLRGPCNAPIEIQVDGTIEAPADLTQLDGKYQWIIFGYFDFFTLSGVGTFDGLGEVAWKQNGCGKNKNCNMLSMNF GFYFLNNSIIKGITSKDSKYFHVNVFGCKNLTFMDFSATAPA | |||
| GH28 | 191 | 314 | 2.4e-36 |
| DGSKQITILNVTCGPGHGISVGSLGKYSNEEPLEYITVRNCTLRNTDNGLRIKTWPTTPITYDLVSNLHFENIIMDNVSNPVIIIDQDKVTFKDITGTSA TQNGVVLICSSGVPCEEVVLSNID | |||
| Full Sequence |
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| Protein Sequence Length: 363 Download |
| MDIGICTFVL LLLMASSSRS QSVVLDVTKH ATISVGEITE ALIATWKEAC ASTSSSKILI 60 PKGTYKLKQV NLRGPCNAPI EIQVDGTIEA PADLTQLDGK YQWIIFGYFD FFTLSGVGTF 120 DGLGEVAWKQ NGCGKNKNCN MLSMNFGFYF LNNSIIKGIT SKDSKYFHVN VFGCKNLTFM 180 DFSATAPATR DGSKQITILN VTCGPGHGIS VGSLGKYSNE EPLEYITVRN CTLRNTDNGL 240 RIKTWPTTPI TYDLVSNLHF ENIIMDNVSN PVIIIDQDKV TFKDITGTSA TQNGVVLICS 300 SGVPCEEVVL SNIDSHSMEL VSMLHVPTLN QIFWAMHLNV KLRKPGFDLF CFYSIVCLLC 360 TY* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-46 | 39 | 314 | 329 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-48 | 39 | 314 | 328 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-49 | 11 | 313 | 356 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-73 | 39 | 314 | 325 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-76 | 50 | 314 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 1 | 313 | 1 | 364 | polygalactorunase PG11 precursor [Medicago sativa] |
| GenBank | ABN08387.1 | 0 | 1 | 278 | 1 | 281 | Pectolytic enzyme, Pectin lyase fold [Medicago truncatula] |
| DDBJ | BAA89477.1 | 0 | 5 | 314 | 10 | 363 | polygalacturonase [Salix gilgiana] |
| EMBL | CAA72003.1 | 0 | 3 | 313 | 5 | 362 | polygalacturonase [Medicago sativa] |
| Swiss-Prot | Q40312 | 0 | 1 | 314 | 1 | 365 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.00000007 | 195 | 303 | 186 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000007 | 195 | 303 | 186 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000007 | 195 | 303 | 186 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.00000007 | 195 | 303 | 186 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.00000007 | 195 | 303 | 186 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 20 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CU617067 | 311 | 1 | 277 | 0 |
| CO132750 | 302 | 8 | 274 | 0 |
| CO121809 | 299 | 8 | 271 | 0 |
| EC987202 | 285 | 20 | 271 | 0 |
| CO114621 | 273 | 37 | 277 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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