CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00010178m
FamilyGH43
Protein PropertiesLength: 478 Molecular Weight: 54354.8 Isoelectric Point: 9.6046
ChromosomeChromosome/Scaffold: 004743 Start: 13234 End: 15235
DescriptionArabinanase/levansucrase/invertase
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431593813.1e-36
  IMYDDKTAKFYWYGENKDGPTYQAHPKGTQRVNIIGVSCYSSKDLWSWTHEGIVLHGEPTNVTHDLHKSKVLERPKVIYNDHTGKYVMLMHIDDANYTKA
  SVGVAVSNSPTGPFTYLYSFRPHGFESRDMTVFKDDDGAAYLFYSSRDNTELHISPLTKDYLHITASMKRILIRRHREAPAVFKHQGTYYMITSGCSGWA
  PNRALAHAADSIMGPWETLGNPC
Full Sequence
Protein Sequence     Length: 478     Download
MKISKGRTKM RNKQRKSFAL GFDAGRGYSL SCIVWSLVGF GLVVCFLSFK HQADSGQAHI    60
YLSHLPTTRE LEDIEEDHFR VPPPHKVNPR AVKRRGPRKQ RKVIDDYLEE SSAVHALFFP    120
DQRTAVDPTK GGNDTMYFHP GRVWLDTNGN AIQAHGGGIM YDDKTAKFYW YGENKDGPTY    180
QAHPKGTQRV NIIGVSCYSS KDLWSWTHEG IVLHGEPTNV THDLHKSKVL ERPKVIYNDH    240
TGKYVMLMHI DDANYTKASV GVAVSNSPTG PFTYLYSFRP HGFESRDMTV FKDDDGAAYL    300
FYSSRDNTEL HISPLTKDYL HITASMKRIL IRRHREAPAV FKHQGTYYMI TSGCSGWAPN    360
RALAHAADSI MGPWETLGNP CVGGNRFYRL TTFLSQSTFV LPLPGLPGTF IFMADRWSPS    420
NLRDSRYVWL PLFIGGLADE PLDYSFGFPL WSRVSIYWHK KWRLPEAWRV GYTSLLQ*      480
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd09004GH43_bXyl7.0e-22159379233+
cd08990GH43_AXH_like2.0e-26197375193+
cd08978GH_F9.0e-43167434279+
cd08985GH43_66.0e-130152434284+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEAY76702.10147364535hypothetical protein OsI_04657 [Oryza sativa Indica Group]
RefSeqNP_001044987.1014731472Os01g0879400 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001151925.106946964465glycosyl hydrolase, family 43 protein [Zea mays]
RefSeqXP_002456734.1014721472hypothetical protein SORBIDRAFT_03g041630 [Sorghum bicolor]
RefSeqXP_002468324.105046946465hypothetical protein SORBIDRAFT_01g043810 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F014145645346A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid
PDB3vt2_E014145645346A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid
PDB3vt2_D014145645346A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid
PDB3vt2_C014145645346A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid
PDB3vt2_B014145645346A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid
Transmembrane Domains
StartEnd
2749
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8561533351354690
JG880389283503320
JG9067672731093810
JG7741922362434780
JG906767273754014.4
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980Bra036036
Capsella rubellaCarubv10027885mCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny