| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.002G113100.1 |
| Family | CBM22 |
| Protein Properties | Length: 1090 Molecular Weight: 120639 Isoelectric Point: 5.5519 |
| Chromosome | Chromosome/Scaffold: 02 Start: 8433037 End: 8442433 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM22 | 42 | 177 | 1.3e-28 |
| NVILNPRFEDGLNNWSGKGCKIELHKSMEDGKVFPQSGMFFASATNRTENWNGIEQDITGRVQRKVAYQVTAVVRIYVDNDTSAGVQITLWLQEPDFREQ YISIARLVTNKDWVQLQGEFLLNETPSRLVIYLEGP | |||
| CBM22 | 375 | 511 | 3.5e-31 |
| NIILNPQFDDGLNNWSGRGCKIVIHDSMADGKIVPLSGKLFASATERTQSWNGIQQEITERVQRKLAYEVTAVVRIFGNNVTSADIRATLWVQTPNLREQ YIGIANLQATDKDWVQLQGKFLLNGSPKRVVIYIEGP | |||
| CBM22 | 204 | 341 | 1e-33 |
| NIILNHDFSRGLYSWHPNCCDGFVLSADSGHSGFSTKPGGNYAVVSNRKECWQGLEQDITSRISPCSTYSISARVGVSGLVQYPTDVLATLKLEYQNSAT SYLPVGKTSVSKEGWEKLEGTFSLATMPDRVVFYLEGP | |||
| CBM22 | 546 | 687 | 1.4013e-43 |
| NIIQNSNLSDGTNSWFPLGNCTLTVATGSPHILPPMARDSLGPHEPLSGRCILVTKRTQTWMGPAQMITDKLKLLLTYQVSAWVKIGSGATGPQNVNVAL GVDSQWVNGGQVEINDDRWHEIGGSFRIEKQPSKVMVYVQGP | |||
| GH10 | 745 | 1019 | 0 |
| QMQNSFPFGSCMSRTNLDNEDFVNFFVKNFNWAVFGNELKWYWTEPQQGNFNYSDADEMLDLCKKNNIEARGHCIFWEVDGTVQQWIKALNKNDMMTAVQ NRLTGLLTRYTGKFRHYDVNNEMLHGSFYQDHLGKDIRANMFKTANQLDPSAMLFVNDYHVEDGCDTRSSPEKYIEQILDLQEQGAPVGGIGIQGHIDSP VGPVVCSALDKLGILGLPIWFTELDVSSVNEHVRGDDLEVMLREAYAHPAVDGIMLWGFWELFMSRDNAHLVNAE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1090 Download |
| MEIHFSSLAL VSVVVLHLGL SAESIPVYQA TTTGPVGAGD DNVILNPRFE DGLNNWSGKG 60 CKIELHKSME DGKVFPQSGM FFASATNRTE NWNGIEQDIT GRVQRKVAYQ VTAVVRIYVD 120 NDTSAGVQIT LWLQEPDFRE QYISIARLVT NKDWVQLQGE FLLNETPSRL VIYLEGPSPG 180 TDILVNSLTV SQNMIDSSNS NAPNIILNHD FSRGLYSWHP NCCDGFVLSA DSGHSGFSTK 240 PGGNYAVVSN RKECWQGLEQ DITSRISPCS TYSISARVGV SGLVQYPTDV LATLKLEYQN 300 SATSYLPVGK TSVSKEGWEK LEGTFSLATM PDRVVFYLEG PAPGVDLLIE SVIITCSCPS 360 ECNNARPCSG DGDGNIILNP QFDDGLNNWS GRGCKIVIHD SMADGKIVPL SGKLFASATE 420 RTQSWNGIQQ EITERVQRKL AYEVTAVVRI FGNNVTSADI RATLWVQTPN LREQYIGIAN 480 LQATDKDWVQ LQGKFLLNGS PKRVVIYIEG PPAGTDILVN SFVVKHAEKI APSPPPVIEN 540 PAFGVNIIQN SNLSDGTNSW FPLGNCTLTV ATGSPHILPP MARDSLGPHE PLSGRCILVT 600 KRTQTWMGPA QMITDKLKLL LTYQVSAWVK IGSGATGPQN VNVALGVDSQ WVNGGQVEIN 660 DDRWHEIGGS FRIEKQPSKV MVYVQGPAAG VDLMLAGLQI FPVDRESRFK HLRRQTDKIR 720 KRDVTLKFSG GGSSSVLGTF IKVRQMQNSF PFGSCMSRTN LDNEDFVNFF VKNFNWAVFG 780 NELKWYWTEP QQGNFNYSDA DEMLDLCKKN NIEARGHCIF WEVDGTVQQW IKALNKNDMM 840 TAVQNRLTGL LTRYTGKFRH YDVNNEMLHG SFYQDHLGKD IRANMFKTAN QLDPSAMLFV 900 NDYHVEDGCD TRSSPEKYIE QILDLQEQGA PVGGIGIQGH IDSPVGPVVC SALDKLGILG 960 LPIWFTELDV SSVNEHVRGD DLEVMLREAY AHPAVDGIML WGFWELFMSR DNAHLVNAEG 1020 ELNEAGKRYL ALKKEWLSRT HGCIDEQGQF AFRGFHGTYV LEIETVSKKI MKTFVVDKGD 1080 SPLVVSIDL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-17 | 374 | 515 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 5.0e-19 | 204 | 343 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 5.0e-34 | 725 | 1003 | 300 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-78 | 748 | 1033 | 306 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 5.0e-79 | 783 | 1028 | 267 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 36 | 354 | 195 | 526 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| GenBank | AAX33301.1 | 0 | 42 | 519 | 30 | 521 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| GenBank | AAX33301.1 | 0 | 186 | 1089 | 12 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002301133.1 | 0 | 37 | 354 | 330 | 660 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 41 | 1089 | 1 | 1049 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 3e-29 | 752 | 1002 | 18 | 268 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1i1w_A | 3e-29 | 752 | 1002 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 6e-29 | 752 | 971 | 18 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1tux_A | 8e-29 | 752 | 971 | 18 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1gor_A | 3e-28 | 752 | 971 | 18 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
