Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G113100.2 |
Family | CBM22 |
Protein Properties | Length: 757 Molecular Weight: 84715.1 Isoelectric Point: 6.0025 |
Chromosome | Chromosome/Scaffold: 02 Start: 8432852 End: 8436621 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 42 | 178 | 2.4e-31 |
NVILNPRFEDGLNNWSGKGCKIELHKSMEDGKVFPQSGMFFASATNRTENWNGIEQDITGRVQRKVAYQVTAVVRIYVDNDTSAGVQITLWLQEPDFREQ YISIASSQVTNKDWVQLQGEFLLNETPSRLVIYLEGP | |||
CBM22 | 213 | 354 | 5.19994e-41 |
NIIENSYLDDGTTGWFPLGNCALSVGTGSPHVLPPMARDSLGTYESLSGRYIMVTNRSDSWMGPAQMITDKLKLYLTYQVSAWVRIGPGATSPQIVNVAL GVDGQWINGGEVEFNDDNWHEIGGSFRIEKQPSNVMVYVQGP | |||
GH10 | 412 | 693 | 0 |
QIKNSFPLGSCVTRTSMDNEKFVKFLVKSFNWAVFENELKWSWTEPQEGKFNYRDADELLDLCKSYNIEVRGHCIFWEMEYTIQSWVRSLNASGLMTAVQ NRLTGLLTRYKGQFRHYDVNNEMLHGSFYLDRLGKDIRANMFKTSHELDPYATLFVNDYHIEDGSDIRSTPEKYIQQILDLQKQGAPVGGIGIQGHIDVP VGPIICSALDKLGTLGIPIWFTELDVSCPNEFVRADDLEVVLREAFAHPAVEGVILWGFWELYMSRKNAHLVNADGKINAAG |
Full Sequence |
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Protein Sequence Length: 757 Download |
MEIHFSSLAL VSVVVLHLGL SAESIPVYQA TTTGPVGAGD DNVILNPRFE DGLNNWSGKG 60 CKIELHKSME DGKVFPQSGM FFASATNRTE NWNGIEQDIT GRVQRKVAYQ VTAVVRIYVD 120 NDTSAGVQIT LWLQEPDFRE QYISIASSQV TNKDWVQLQG EFLLNETPSR LVIYLEGPSP 180 GTDILVNSLV VKRAEKIPAS ARPFSKNATF GGNIIENSYL DDGTTGWFPL GNCALSVGTG 240 SPHVLPPMAR DSLGTYESLS GRYIMVTNRS DSWMGPAQMI TDKLKLYLTY QVSAWVRIGP 300 GATSPQIVNV ALGVDGQWIN GGEVEFNDDN WHEIGGSFRI EKQPSNVMVY VQGPASGVDL 360 MVSGLQIFPV NRQVRFKYLK KQTDKIRKRD IILKFSRSES SNTVGNSVKV RQIKNSFPLG 420 SCVTRTSMDN EKFVKFLVKS FNWAVFENEL KWSWTEPQEG KFNYRDADEL LDLCKSYNIE 480 VRGHCIFWEM EYTIQSWVRS LNASGLMTAV QNRLTGLLTR YKGQFRHYDV NNEMLHGSFY 540 LDRLGKDIRA NMFKTSHELD PYATLFVNDY HIEDGSDIRS TPEKYIQQIL DLQKQGAPVG 600 GIGIQGHIDV PVGPIICSAL DKLGTLGIPI WFTELDVSCP NEFVRADDLE VVLREAFAHP 660 AVEGVILWGF WELYMSRKNA HLVNADGKIN AAGKRFLSLK KEWLSHASGH IDELGEFRFR 720 GFHGTYNVEF VSTTEKVNMT FVVDQGESPL VVSIDL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 4.0e-13 | 212 | 357 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 3.0e-17 | 42 | 182 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-37 | 401 | 670 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 8.0e-80 | 450 | 696 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 7.0e-80 | 413 | 700 | 308 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002283550.1 | 0 | 36 | 756 | 261 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002283550.1 | 5e-39 | 42 | 439 | 94 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 37 | 756 | 330 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510024.1 | 0 | 37 | 756 | 108 | 827 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002510024.1 | 0.000000003 | 200 | 426 | 101 | 308 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2bnj_A | 2e-31 | 399 | 690 | 1 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1gor_A | 2e-31 | 399 | 690 | 1 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1goq_A | 2e-31 | 399 | 690 | 1 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1goo_A | 2e-31 | 399 | 690 | 1 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1gom_A | 2e-31 | 399 | 690 | 1 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |