| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.004G014100.1 |
| Family | CBM53 |
| Protein Properties | Length: 1164 Molecular Weight: 132063 Isoelectric Point: 6.865 |
| Chromosome | Chromosome/Scaffold: 04 Start: 906911 End: 917665 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM53 | 281 | 364 | 1.4e-31 |
| EDIEVFLNRSLSTLSDEPDILIMGAFNDWRWKSFTFRLSKTHLNGDWWSCQVHVPKEAYKMDFVFFNGQDVYDNNDRKDFYILV | |||
| CBM53 | 456 | 545 | 1.6e-34 |
| DTIKLYYNKSSGPLAHANDLWVHGGHNNWKDGLSIVERLVSSDKKDGDWWYANVVVPDRAFVLDWVFADGPPQNATVYDNNHRQDFHAIV | |||
| CBM53 | 617 | 705 | 2.3e-35 |
| GSTVTVFYNPANTILNGKPEVWFRGSFNRWTHRKGPLPPQKMLPADNGSHVKATVKVPLDAYMMDFVFSEKEDGGIFDNREGMDYHIPV | |||
| GT5 | 716 | 1159 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMKISHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQNGMFWAGCVYGCKND GERFGFFCHAALEFLQQSGFHPDIIHCHDWSSAPVAWLFKDHYMHYGLSKSRVVFTIHNLEFGANNIGKAMAYSDKATTVSPTYSREISGNPLIASHLHK FHGILNGIDPDIWDPYNDTYIPVPYTSENVVEGKRAAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRVQNDFV NLANHLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIAVVRKTGGLFDTVFDVDHDKERAKAQGLEPNGFNFDGADPAGV DYALNRAISAWYDGRDWFNSMCKKVMEQDWSWNKPALDYLELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1164 Download |
| MEVALLVQSP LSCSGRGVFS ERNGLKIKPF LVGSFPHVRS GQLSSLNSWR KEFPASGVSF 60 RIAATADFSK RRQRKMSNAR PRGSSPKGFT PKTPVGTSTQ KRDLENNGEK EGSVTPKSSE 120 IAEANKQTLE TQVEEDEELA IEHSGEKKVD EEKIGEEVSL MSKKVAVANG NQVVKNGSIS 180 RVGKDVTLSE DKIALEGSQN DDLKNDGIVK EKSISIDARK TEDDSLQIKL KLEMEEKLRK 240 EETDRLAEEK LRKQEIERLA EENFSKGNKL FVYPQMVKPD EDIEVFLNRS LSTLSDEPDI 300 LIMGAFNDWR WKSFTFRLSK THLNGDWWSC QVHVPKEAYK MDFVFFNGQD VYDNNDRKDF 360 YILVEGGMDA FAFDDFLLEE KRRELEKLAK EQAVKERLAE EQRRREAEKA ASEADRAQAR 420 AEIEKRRRTL QELMKKAARS FNNVCHVEPS EFKGEDTIKL YYNKSSGPLA HANDLWVHGG 480 HNNWKDGLSI VERLVSSDKK DGDWWYANVV VPDRAFVLDW VFADGPPQNA TVYDNNHRQD 540 FHAIVPNGIP EELYWVEEEH QIYRKLQEKR RLREDAIRAK AEKTARIKAE TKEQTLKRFL 600 LSQKHIVYTE PLDVQAGSTV TVFYNPANTI LNGKPEVWFR GSFNRWTHRK GPLPPQKMLP 660 ADNGSHVKAT VKVPLDAYMM DFVFSEKEDG GIFDNREGMD YHIPVSGGIA KEPPMHIVHI 720 AVEMAPIAKV GGLGDVVTSL SRAVQDLNHS VDIILPKYDC MKISHVKDLH YQRSYSWGGT 780 EIKVWFGKVE GLSVYFLEPQ NGMFWAGCVY GCKNDGERFG FFCHAALEFL QQSGFHPDII 840 HCHDWSSAPV AWLFKDHYMH YGLSKSRVVF TIHNLEFGAN NIGKAMAYSD KATTVSPTYS 900 REISGNPLIA SHLHKFHGIL NGIDPDIWDP YNDTYIPVPY TSENVVEGKR AAKEALQQRL 960 GLKKADLPLV GIITRLTHQK GIHLIKHAIW RTLERGGQVV LLGSAPDPRV QNDFVNLANH 1020 LHSSHHDRAR LCLTYDEPLS HLIYAGADFI LVPSIFEPCG LTQLTAMRYG SIAVVRKTGG 1080 LFDTVFDVDH DKERAKAQGL EPNGFNFDGA DPAGVDYALN RAISAWYDGR DWFNSMCKKV 1140 MEQDWSWNKP ALDYLELYHS ARK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 3.0e-147 | 715 | 1161 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 2.0e-158 | 715 | 1161 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 3.0e-172 | 715 | 1163 | 486 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 76 | 1163 | 1088 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 716 | 1160 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0 | 1 | 1163 | 1 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| EMBL | CAB40374.1 | 0 | 47 | 1163 | 26 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1163 | 1 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 76 | 1163 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 76 | 1163 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 715 | 1159 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 715 | 1159 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 715 | 1159 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 715 | 1159 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 715 | 1159 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| HO778003 | 703 | 248 | 950 | 0 |
| HO794758 | 567 | 597 | 1163 | 0 |
| HO778003 | 149 | 566 | 709 | 0.00005 |
| HO794758 | 111 | 264 | 368 | 0.002 |
| HO794758 | 132 | 423 | 552 | 0.011 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
