| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.004G014100.2 |
| Family | CBM53 |
| Protein Properties | Length: 1045 Molecular Weight: 119552 Isoelectric Point: 6.8017 |
| Chromosome | Chromosome/Scaffold: 04 Start: 906911 End: 916545 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 162 | 245 | 1.2e-31 |
| EDIEVFLNRSLSTLSDEPDILIMGAFNDWRWKSFTFRLSKTHLNGDWWSCQVHVPKEAYKMDFVFFNGQDVYDNNDRKDFYILV | |||
| CBM53 | 337 | 426 | 1.4e-34 |
| DTIKLYYNKSSGPLAHANDLWVHGGHNNWKDGLSIVERLVSSDKKDGDWWYANVVVPDRAFVLDWVFADGPPQNATVYDNNHRQDFHAIV | |||
| CBM53 | 498 | 586 | 2e-35 |
| GSTVTVFYNPANTILNGKPEVWFRGSFNRWTHRKGPLPPQKMLPADNGSHVKATVKVPLDAYMMDFVFSEKEDGGIFDNREGMDYHIPV | |||
| GT5 | 597 | 1040 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHSVDIILPKYDCMKISHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQNGMFWAGCVYGCKND GERFGFFCHAALEFLQQSGFHPDIIHCHDWSSAPVAWLFKDHYMHYGLSKSRVVFTIHNLEFGANNIGKAMAYSDKATTVSPTYSREISGNPLIASHLHK FHGILNGIDPDIWDPYNDTYIPVPYTSENVVEGKRAAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRVQNDFV NLANHLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIAVVRKTGGLFDTVFDVDHDKERAKAQGLEPNGFNFDGADPAGV DYALNRAISAWYDGRDWFNSMCKKVMEQDWSWNKPALDYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1045 Download |
| MLIDEFEYSL EFELHLYADF SKRRQRKMSN ARPRGSSPKG FTPKTPVGTS TQKRDLENNG 60 EKEGSVTPKS KDKIALEGSQ NDDLKNDGIV KEKSISIDAR KTEDDSLQIK LKLEMEEKLR 120 KEETDRLAEE KLRKQEIERL AEENFSKGNK LFVYPQMVKP DEDIEVFLNR SLSTLSDEPD 180 ILIMGAFNDW RWKSFTFRLS KTHLNGDWWS CQVHVPKEAY KMDFVFFNGQ DVYDNNDRKD 240 FYILVEGGMD AFAFDDFLLE EKRRELEKLA KEQAVKERLA EEQRRREAEK AASEADRAQA 300 RAEIEKRRRT LQELMKKAAR SFNNVCHVEP SEFKGEDTIK LYYNKSSGPL AHANDLWVHG 360 GHNNWKDGLS IVERLVSSDK KDGDWWYANV VVPDRAFVLD WVFADGPPQN ATVYDNNHRQ 420 DFHAIVPNGI PEELYWVEEE HQIYRKLQEK RRLREDAIRA KAEKTARIKA ETKEQTLKRF 480 LLSQKHIVYT EPLDVQAGST VTVFYNPANT ILNGKPEVWF RGSFNRWTHR KGPLPPQKML 540 PADNGSHVKA TVKVPLDAYM MDFVFSEKED GGIFDNREGM DYHIPVSGGI AKEPPMHIVH 600 IAVEMAPIAK VGGLGDVVTS LSRAVQDLNH SVDIILPKYD CMKISHVKDL HYQRSYSWGG 660 TEIKVWFGKV EGLSVYFLEP QNGMFWAGCV YGCKNDGERF GFFCHAALEF LQQSGFHPDI 720 IHCHDWSSAP VAWLFKDHYM HYGLSKSRVV FTIHNLEFGA NNIGKAMAYS DKATTVSPTY 780 SREISGNPLI ASHLHKFHGI LNGIDPDIWD PYNDTYIPVP YTSENVVEGK RAAKEALQQR 840 LGLKKADLPL VGIITRLTHQ KGIHLIKHAI WRTLERGGQV VLLGSAPDPR VQNDFVNLAN 900 HLHSSHHDRA RLCLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLTAMRY GSIAVVRKTG 960 GLFDTVFDVD HDKERAKAQG LEPNGFNFDG ADPAGVDYAL NRAISAWYDG RDWFNSMCKK 1020 VMEQDWSWNK PALDYLELYH SARK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 1.0e-148 | 596 | 1042 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 2.0e-158 | 596 | 1042 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 7.0e-172 | 596 | 1044 | 486 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 28 | 1044 | 1051 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 597 | 1041 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0 | 81 | 1044 | 280 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| RefSeq | XP_002269011.1 | 0.0000002 | 25 | 105 | 32 | 105 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002269011.1 | 0 | 65 | 1044 | 176 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 28 | 1044 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 42 | 1044 | 80 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 596 | 1040 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 596 | 1040 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 596 | 1040 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 596 | 1040 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 596 | 1040 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 703 | 129 | 831 | 0 |
| HO794758 | 567 | 478 | 1044 | 0 |
| HO778003 | 149 | 447 | 590 | 0.00004 |
| HO794758 | 111 | 145 | 249 | 0.001 |
| HO794758 | 132 | 304 | 433 | 0.007 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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