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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G123600.2 |
Family | GT35 |
Protein Properties | Length: 1012 Molecular Weight: 114712 Isoelectric Point: 5.1272 |
Chromosome | Chromosome/Scaffold: 04 Start: 11895488 End: 11905902 |
Description | Glycosyl transferase, family 35 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 176 | 534 | 0 |
ALSKLGHSLENVACQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQQITKDGQEEVAEDWLEMGNPWEILRNDISYPIKFYGKVVSGS DGKKHWIGGEDIKAVAYDVPIPGYKTKTTINLRLWSTKAPSEDLDLYAFNAGDHTKAYEALSNAEKICHILYPGDDSLEGKILRLKQQYTLCSASLQDII SCFERRSGSNIDWEKFPEKVAVQMNDTHPTLCIPELMRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSLELMQKLLPRHVEIIELIDEELICT IVSEYGTEDSDLLEKKLKEMRILENVDLPSAFAELIVKPKQSSVGVTSEELENSDEETK | |||
GT35 | 599 | 1006 | 0 |
IMAEPPPKPPKMVRMANLAVVGGHAVNGVAEIHSEIVKDEVFNAFYKLWPDKFQNKTNGVTPRRWIHFCNPGLSKIITDWIGMDDWVLNTEKLAELRKFS DNEDLQVQWKAAKRSNKMKVISFLKEKTGYSVSPDAMFDIQVKRIHEYKRQLLNILGIVYRYKKMKEMTAAERKAKYVPRVCIFGGKAFSTYVQAKRIVK FITDVGATVNHDPEIGDLLKVVFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEDNFFLFGARAHEIAGL RKERADGEFVPDPSFEEVKDFVKSGVFGPCNYDELIGSLEGNEGFGRADYFLVGKDFPSYIECQEEVDKAYHDQKTWTKMSIMNTAGSYKFSSDRTIHEY AREIWNIE |
Full Sequence |
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Protein Sequence Length: 1012 Download |
MATTSSHFSP TSHWCSNGSS ISRLVDFGSK WRRKQQLFSM NSRRVVKRRS VSVSIKNVSS 60 SEPKQKLKDD ALIEEEEVPR ILNPSTPNAS SIASSIKYHA EFTPLFSPER FELPKAYYAT 120 AQSVRDALII NWNSTYESYE RLNAKQAYYL SMEFLQGRAL LNAIGNLELT GAYAEALSKL 180 GHSLENVACQ EPDAALGNGG LGRLASCFLD SLATLNYPAW GYGLRYKYGL FKQQITKDGQ 240 EEVAEDWLEM GNPWEILRND ISYPIKFYGK VVSGSDGKKH WIGGEDIKAV AYDVPIPGYK 300 TKTTINLRLW STKAPSEDLD LYAFNAGDHT KAYEALSNAE KICHILYPGD DSLEGKILRL 360 KQQYTLCSAS LQDIISCFER RSGSNIDWEK FPEKVAVQMN DTHPTLCIPE LMRILIDLKG 420 LSWKEAWNIT QRTVAYTNHT VLPEALEKWS LELMQKLLPR HVEIIELIDE ELICTIVSEY 480 GTEDSDLLEK KLKEMRILEN VDLPSAFAEL IVKPKQSSVG VTSEELENSD EETKLVYNSE 540 EETKRANDFE EETKRANDLE EETNLEEETK RANDFEEEME LVDEKDESKS KVTQKKEKIM 600 AEPPPKPPKM VRMANLAVVG GHAVNGVAEI HSEIVKDEVF NAFYKLWPDK FQNKTNGVTP 660 RRWIHFCNPG LSKIITDWIG MDDWVLNTEK LAELRKFSDN EDLQVQWKAA KRSNKMKVIS 720 FLKEKTGYSV SPDAMFDIQV KRIHEYKRQL LNILGIVYRY KKMKEMTAAE RKAKYVPRVC 780 IFGGKAFSTY VQAKRIVKFI TDVGATVNHD PEIGDLLKVV FVPDYNVSVA ELLIPASELS 840 QHISTAGMEA SGTSNMKFAM NGCILIGTLD GANVEIREEV GEDNFFLFGA RAHEIAGLRK 900 ERADGEFVPD PSFEEVKDFV KSGVFGPCNY DELIGSLEGN EGFGRADYFL VGKDFPSYIE 960 CQEEVDKAYH DQKTWTKMSI MNTAGSYKFS SDRTIHEYAR EIWNIEPVEL P* 1020 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00343 | Phosphorylase | 5.0e-129 | 176 | 499 | 324 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
cd04300 | GT1_Glycogen_Phosphorylase | 5.0e-176 | 93 | 461 | 373 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 607 | 1005 | 404 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
pfam00343 | Phosphorylase | 0 | 609 | 1007 | 404 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
TIGR02093 | P_ylase | 0 | 609 | 1005 | 402 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ11757.1 | 0 | 54 | 1011 | 5 | 935 | alpha-1,4 glucan phosphorylase [Gossypium hirsutum] |
Swiss-Prot | P27598 | 0 | 88 | 1011 | 68 | 955 | PHSL_IPOBA RecName: Full=Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L; Flags: Precursor |
Swiss-Prot | P53536 | 0 | 1 | 1010 | 1 | 1002 | PHSL_VICFA RecName: Full=Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L; Flags: Precursor |
RefSeq | XP_002305367.1 | 0 | 40 | 1011 | 1 | 949 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526085.1 | 0 | 1 | 1011 | 1 | 977 | glycogen phosphorylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1z8d_A | 0 | 609 | 1007 | 438 | 830 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
PDB | 1z8d_A | 0 | 88 | 522 | 24 | 457 | A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose |
PDB | 2qll_A | 0 | 609 | 1010 | 438 | 833 | A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex |
PDB | 2qll_A | 0 | 88 | 499 | 24 | 433 | A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex |
PDB | 1l7x_B | 0 | 609 | 1010 | 438 | 833 | A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1826 | EC-2.4.1.1 | phosphorylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797178 | 384 | 629 | 1012 | 0 |
HO778303 | 384 | 629 | 1012 | 0 |
HO620767 | 403 | 610 | 1012 | 0 |
HO613954 | 403 | 610 | 1012 | 0 |
HO778303 | 53 | 65 | 117 | 0.00000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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