| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.011G158200.1 |
| Family | AA7 |
| Protein Properties | Length: 263 Molecular Weight: 29218.8 Isoelectric Point: 5.4149 |
| Chromosome | Chromosome/Scaffold: 11 Start: 17543518 End: 17544401 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 24 | 117 | 3.2e-38 |
| QLTFDVANEVAWVQTRATLGEVYYRVAEESEAYGFPAGVCPTVGVGGHFSGGGYGNTMRKYGLSVDNVIDAKIVNVNGRLLDRKSMEEDLFWAV | |||
| Full Sequence |
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| Protein Sequence Length: 263 Download |
| MTMKEFLICP IAHSFSSKCS TSEQLTFDVA NEVAWVQTRA TLGEVYYRVA EESEAYGFPA 60 GVCPTVGVGG HFSGGGYGNT MRKYGLSVDN VIDAKIVNVN GRLLDRKSME EDLFWAVTEQ 120 STKMQQILLS SGNKLLTILM MNFFIRTDMD EVNSATRIGE KTVRTTFLAL LLGDLKRLLS 180 IMNASFPKLG LLRSDCFEIS WLESVLFWAN FPLETPTDAL LSGTPQSLTY LKIKSDYVQK 240 PIPRDGLEGI WKKMVELQVP VA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01565 | FAD_binding_4 | 1.0e-6 | 25 | 105 | 81 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002299026.1 | 0 | 28 | 260 | 132 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002299027.1 | 0 | 28 | 260 | 67 | 328 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317085.1 | 0 | 1 | 262 | 1 | 262 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333959.1 | 0 | 28 | 260 | 139 | 401 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523152.1 | 0 | 25 | 261 | 116 | 380 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 5.99994e-41 | 23 | 259 | 109 | 382 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 1e-35 | 25 | 256 | 114 | 363 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 1e-35 | 25 | 256 | 114 | 363 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 1e-32 | 28 | 250 | 115 | 356 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 1e-32 | 28 | 250 | 115 | 356 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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