| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.011G167100.1 |
| Family | AA7 |
| Protein Properties | Length: 315 Molecular Weight: 35102.3 Isoelectric Point: 6.1696 |
| Chromosome | Chromosome/Scaffold: 11 Start: 18301701 End: 18302955 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 10 | 129 | 1.1e-35 |
| LGVRIRIGGHDYDGLSHASSVPFIMVDLFNMRSITVQYHGAWMMSGAKLGEVYYRIAEKSKIHSYPAGVCPAVGVGSHLSGGGYGNLMSKYGFSVDNIVD AVVVDASGDDVADKTDEDLF | |||
| Full Sequence |
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| Protein Sequence Length: 315 Download |
| IIELSFVPSL GVRIRIGGHD YDGLSHASSV PFIMVDLFNM RSITVQYHGA WMMSGAKLGE 60 VYYRIAEKSK IHSYPAGVCP AVGVGSHLSG GGYGNLMSKY GFSVDNIVDA VVVDASGDDV 120 ADKTDEDLFI RVVLNPVARK GQVAIKAKFN ALFLGDAQRL VSLMDEKFPE LSQYCFGLII 180 KLNMIQLQKP VLTFNPYEGK KSEVSELDTP FPHRAENIYK IQHAVSWKEG VEGLDRNLDL 240 IRKLYDYMTP FYIDLGINEI GNASYEQASS WSMKYFKGNF DRLMLVMVDP GNFFTYEQSI 300 PSLAAASWKN RMSE* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 3.0e-7 | 271 | 301 | 33 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN80091.1 | 0 | 10 | 303 | 103 | 529 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300580.1 | 2e-38 | 2 | 129 | 74 | 204 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002300580.1 | 0 | 120 | 314 | 255 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317089.1 | 0 | 10 | 311 | 102 | 537 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523156.1 | 0 | 2 | 306 | 75 | 510 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 2e-40 | 12 | 303 | 81 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 2e-40 | 12 | 303 | 81 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 1e-37 | 9 | 303 | 76 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 1e-37 | 9 | 303 | 76 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 1e-37 | 9 | 303 | 76 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| berberine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
| dehydroscoulerine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
| sanguinarine and macarpine biosynthesis | RETICULINE-OXIDASE-RXN | EC-1.21.3.3 | reticuline oxidase |
| Hydropathy |
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