| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s101_78V6.1 |
| Family | CBM67 |
| Protein Properties | Length: 772 Molecular Weight: 85621.8 Isoelectric Point: 5.8006 |
| Chromosome | Chromosome/Scaffold: 101 Start: 373930 End: 376245 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM67 | 7 | 182 | 8.8e-35 |
| AVRYQTMRLRREFEVKSQIHRATLYVCGLGQYEATIDGSKVGEDLFTPGWTNYRKTCLYDTYDVTMQLQRTGRHALGILLGNGMYHIEDPGGRYTKFLNS FGPLKAIAQLHLEYATGPTVIVSTNGSWRISPGPITFSHMFAGEDYDARLEARGWDSPGFNDEKWDYAAVLDGPGG | |||
| GH78 | 208 | 723 | 0 |
| ELKEGVAVYDLGQNATMMPLIKVSGAAGSKVRIIPAELINDDGSVNRISCGGGMAYWEYTLAGNDSSRMSETYFPKFWYHASRYLQVERIGSAEGQPLPI VESLQNVIVHSISPPVGQFSCSNDLFNKIYTLIRWAQRSNMWCYMTDCPHRERLGWLEQTHLNGPALRYNFRLDKLFTKTMHDMSDTQSEDGMLTTTAPE YMIFDGWYSEYRNSPEWSSAFLIIAWQQYEFSGDLEPLRLYFDNMVRYVGYLTSRAVDLIVSFGLSDWYDIGPGDPGPSKLTPKGVTGTAFYYQDSLILA KAAKLLGRNEDIAKFEEQAERIRAAFNAKYFNADTNQYATGSQCANAIALVMGLVDPSNESAVLENIVADVEAKGLTAGDVGFRYLLRALAGGNRSDVIF KMVNQSDKPGYGMQLAKGATALTEAWDANPRSSHNHFMLGQITEWFFHDLAGIQSDPEVPGFGKVVIKPTFVGDLTWLKASYDSVHGRVVSEWSRSNDGE VTLTATIPATTTGRVM | |||
| Full Sequence |
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| Protein Sequence Length: 772 Download |
| MVARADAVRY QTMRLRREFE VKSQIHRATL YVCGLGQYEA TIDGSKVGED LFTPGWTNYR 60 KTCLYDTYDV TMQLQRTGRH ALGILLGNGM YHIEDPGGRY TKFLNSFGPL KAIAQLHLEY 120 ATGPTVIVST NGSWRISPGP ITFSHMFAGE DYDARLEARG WDSPGFNDEK WDYAAVLDGP 180 GGKLRGTSVA APPIRAIEVW NVAKPSKELK EGVAVYDLGQ NATMMPLIKV SGAAGSKVRI 240 IPAELINDDG SVNRISCGGG MAYWEYTLAG NDSSRMSETY FPKFWYHASR YLQVERIGSA 300 EGQPLPIVES LQNVIVHSIS PPVGQFSCSN DLFNKIYTLI RWAQRSNMWC YMTDCPHRER 360 LGWLEQTHLN GPALRYNFRL DKLFTKTMHD MSDTQSEDGM LTTTAPEYMI FDGWYSEYRN 420 SPEWSSAFLI IAWQQYEFSG DLEPLRLYFD NMVRYVGYLT SRAVDLIVSF GLSDWYDIGP 480 GDPGPSKLTP KGVTGTAFYY QDSLILAKAA KLLGRNEDIA KFEEQAERIR AAFNAKYFNA 540 DTNQYATGSQ CANAIALVMG LVDPSNESAV LENIVADVEA KGLTAGDVGF RYLLRALAGG 600 NRSDVIFKMV NQSDKPGYGM QLAKGATALT EAWDANPRSS HNHFMLGQIT EWFFHDLAGI 660 QSDPEVPGFG KVVIKPTFVG DLTWLKASYD SVHGRVVSEW SRSNDGEVTL TATIPATTTG 720 RVMIPTSASS PAELPASNCR EGCMLLKFDG SFAVYEIIKP GTYTFIAPYN A* 780 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3408 | GDB1 | 0.003 | 395 | 542 | 160 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| pfam08531 | Bac_rhamnosid_N | 2.0e-55 | 23 | 198 | 177 | + Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. | ||
| pfam05592 | Bac_rhamnosid | 6.0e-142 | 207 | 706 | 511 | + Bacterial alpha-L-rhamnosidase. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001768239.1 | 0 | 1 | 771 | 114 | 884 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_001196412.1 | 0 | 1 | 742 | 172 | 903 | alpha-L-rhamnosidase [Flavobacterium johnsoniae UW101] |
| RefSeq | YP_003093022.1 | 0 | 15 | 765 | 175 | 913 | alpha-L-rhamnosidase [Pedobacter heparinus DSM 2366] |
| RefSeq | ZP_02033625.1 | 0 | 10 | 770 | 190 | 940 | hypothetical protein PARMER_03656 [Parabacteroides merdae ATCC 43184] |
| RefSeq | ZP_03677039.1 | 0 | 14 | 769 | 179 | 928 | hypothetical protein BACCELL_01375 [Bacteroides cellulosilyticus DSM 14838] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3w5n_A | 0 | 4 | 757 | 294 | 1021 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3w5m_A | 0 | 4 | 757 | 294 | 1021 | A Chain A, Crystal Structure Of Streptomyces Avermitilis Alpha-l-rhamnosidase |
| Hydropathy |
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