Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s121_107V6.1 |
Family | CBM22 |
Protein Properties | Length: 1062 Molecular Weight: 117393 Isoelectric Point: 6.3893 |
Chromosome | Chromosome/Scaffold: 121 Start: 706330 End: 712435 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 7 | 142 | 8e-21 |
LIVNPTFIWGSDHGWQPLCCSLSINDTLPQCGRPPSGHPFYCVAHNRKEAWQGIMQDISNQIKVSLEYNVEACVSISGPVELADVRVTLKLENAGNNVSY VSLASGPVSKQEWAVLKGKLKIDAAPVKALVYLEGP | |||
CBM22 | 167 | 303 | 2.2e-22 |
NVLVNPTFNAGLEGWWGLGCQVMHSGVNDWKGIKGPSGKPFAVALNRREGWQGIAQNITDLVQPNANYLLAAMVRTTGSSHEIPNVSATIKLDFGGSNIR YIPVGRVKASNTEWVLLEGKFNLDSLARAAIFYLEGP | |||
CBM22 | 515 | 657 | 2.4e-32 |
NIVENYDLKHGLKHWFGQGCAQLSIASGAPTIVPPAAAMSLACPPYLSGYCLIASNRTQFWEGPAQTITDKLELYVSYQVSAWVRVGRCQGKVGQKVNVA LSLDGKWVTGGDVEADDKSWKEIMGSFRLEKKPKHAMVYAQGP | |||
GH10 | 717 | 999 | 0 |
TSRSFPLGSCINRWSLDNNSYKQFFLQNFNWAVFENEIKWGWTEPQRGIFNYKDADEMIEFCLQHQIPMRGHCIFWEADCSCQDWLKTLSPTEVADALQN RAVDLLSRYRGKFQHYDVNNEMLHGCFFRDRLGPDILPYMFKMAHQFDPEAVLFVNDYHVEDGEDGNSTPEKYVEQIKWLMKKGAPVGGIGVQGHVDTPI GPIICNSLDKLSTVGLPIWMTEIDVAADNEYIRADDLEVMLWESFAHPSVEGIMLWGFWEGACSRKNGFLVDSDKRVNAAGKR |
Full Sequence |
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Protein Sequence Length: 1062 Download |
MAEVTDLIVN PTFIWGSDHG WQPLCCSLSI NDTLPQCGRP PSGHPFYCVA HNRKEAWQGI 60 MQDISNQIKV SLEYNVEACV SISGPVELAD VRVTLKLENA GNNVSYVSLA SGPVSKQEWA 120 VLKGKLKIDA APVKALVYLE GPPGGVDILA SRFSITSELK EPDVGGNVLV NPTFNAGLEG 180 WWGLGCQVMH SGVNDWKGIK GPSGKPFAVA LNRREGWQGI AQNITDLVQP NANYLLAAMV 240 RTTGSSHEIP NVSATIKLDF GGSNIRYIPV GRVKASNTEW VLLEGKFNLD SLARAAIFYL 300 EGPPNGVDLL VSTVVIKRPN PPQCQGSSAM KQVEEHNTQI RISESITQNA TFAHGLQNWN 360 FKGCNGLVCD SLEGSKVLPL EGKFFAVATQ RTDTWSGIEQ TITNRINLET MYDVVATVRM 420 SGNCSRAPVR ASLYLQEADK SERYITMGSI EATSTEWKYL KGRLILLKAP AIASVYLEGP 480 PPGTDILVDS FLIQPASKPE AAAPPVITNP KYGVNIVENY DLKHGLKHWF GQGCAQLSIA 540 SGAPTIVPPA AAMSLACPPY LSGYCLIASN RTQFWEGPAQ TITDKLELYV SYQVSAWVRV 600 GRCQGKVGQK VNVALSLDGK WVTGGDVEAD DKSWKEIMGS FRLEKKPKHA MVYAQGPESG 660 VDLMLAGLQI FAVDRSARIP ILKVQADKVR KRDVFLKLKN GNNCPVPSGI SVRIEQTSRS 720 FPLGSCINRW SLDNNSYKQF FLQNFNWAVF ENEIKWGWTE PQRGIFNYKD ADEMIEFCLQ 780 HQIPMRGHCI FWEADCSCQD WLKTLSPTEV ADALQNRAVD LLSRYRGKFQ HYDVNNEMLH 840 GCFFRDRLGP DILPYMFKMA HQFDPEAVLF VNDYHVEDGE DGNSTPEKYV EQIKWLMKKG 900 APVGGIGVQG HVDTPIGPII CNSLDKLSTV GLPIWMTEID VAADNEYIRA DDLEVMLWES 960 FAHPSVEGIM LWGFWEGACS RKNGFLVDSD KRVNAAGKRF ISVKEEWTTR LHGRAGQYGE 1020 LCFRGYYGRY KAIVDLGELG EVAVDFEVPK GNRTLVLELS L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-11 | 514 | 657 | 150 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-12 | 166 | 305 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 5.0e-37 | 745 | 1005 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-69 | 721 | 1004 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-71 | 755 | 1000 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001770128.1 | 1e-32 | 10 | 316 | 161 | 482 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001770128.1 | 0 | 41 | 493 | 14 | 482 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001770128.1 | 0 | 189 | 1061 | 1 | 873 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781282.1 | 0 | 41 | 493 | 10 | 479 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001781282.1 | 0 | 193 | 1061 | 1 | 870 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-30 | 705 | 974 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-30 | 705 | 974 | 21 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 3e-27 | 721 | 973 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 3e-27 | 721 | 973 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 8e-27 | 721 | 973 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC330628 | 256 | 502 | 757 | 0 |
FC434354 | 205 | 831 | 1035 | 0 |
FC330628 | 166 | 338 | 493 | 0.0000000001 |
FC330628 | 169 | 159 | 316 | 0.00000004 |
FC330628 | 160 | 5 | 155 | 0.00009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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