| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s139_18V6.1 |
| Family | PL1 |
| Protein Properties | Length: 166 Molecular Weight: 17760 Isoelectric Point: 9.4275 |
| Chromosome | Chromosome/Scaffold: 139 Start: 153749 End: 155402 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 2 | 87 | 1.3e-26 |
| VTISNCFLEKHDKTMLLGADPAHTEDRNMRVTVAFNRFGPGLVQRLPRCRFGVFHVLNNDYSAGWGIYAIGGSEDPTILSQGNRFN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 166 Download |
| MVTISNCFLE KHDKTMLLGA DPAHTEDRNM RVTVAFNRFG PGLVQRLPRC RFGVFHVLNN 60 DYSAGWGIYA IGGSEDPTIL SQGNRFNPAG TKEVTKRIND GGPNYGGWQS WNWASSGDVF 120 LGGSYFTGSG AKATSASVYA KAYSTSSRPA DMVPAITKSA GPLML* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-14 | 2 | 161 | 169 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-33 | 2 | 86 | 85 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-33 | 2 | 86 | 85 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001751580.1 | 0 | 1 | 165 | 188 | 352 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001751866.1 | 0 | 1 | 163 | 193 | 358 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001763554.1 | 0 | 1 | 163 | 205 | 366 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001771554.1 | 0 | 1 | 165 | 188 | 352 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001776371.1 | 0 | 2 | 164 | 206 | 367 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 8e-38 | 2 | 161 | 185 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 8e-38 | 2 | 161 | 185 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_B | 0.000000004 | 2 | 89 | 196 | 290 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pe9_A | 0.000000004 | 2 | 89 | 196 | 290 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1ooc_B | 0.000000004 | 2 | 89 | 196 | 290 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
| Hydropathy |
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