| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s1924_1V6.1 |
| Family | GH36 |
| Protein Properties | Length: 1047 Molecular Weight: 116242 Isoelectric Point: 5.2501 |
| Chromosome | Chromosome/Scaffold: 1924 Start: 1450 End: 10176 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH36 | 467 | 1046 | 0 |
| DGYPVHGYWGERLKHRETMGDLLIHTPARAGLDRLPQEYPQYGSGDFRNPAYQAELEDGTRITELKYDGYRILKGKPPLSGLPAVYTEDESEAETLELVL KDAYSGLKVVLLYSIFTARNVIIRSARLINEGDKKLRLRRALSASVDFSGHSDLEMVYLSGAWAREGNMKRRPLEQGETRIDSKRGMSSHQFNPFASLVT PETTERHGEAFGFSLVYSGGFEAGAEVDSFGSTRFSIGMNSFDFAWQLNPGESFQTPEAVMVYSAQGLGEMSRTYHRLYRTRLCRGKYRDEERPILVNNW EATYFDFNADKLVSIAEEGAKLGIELFVLDDGWFGKRDADNSSLGDWYEDRRKLPDGLADVAERINRLGLKFGLWFEPEMISPDSELYRKHPDWCLHVPG RRRSEARWQLVLDYTRQEVRDYIYDSLSAIFSTVPVAYVKWDMNRALTEIGSAALPPERQAETAHRYVLGLYELLERITTDFPHILFESCSSGGGRFDPG MLYYMPQTWTSDNTDAVERLKIQYGTSLVYPVSAIGAHVSAVPNHQVGRITPLDFRGNVAMSGNFGYELDLTKFTDDEKE | |||
| Full Sequence |
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| Protein Sequence Length: 1047 Download |
| MLFGAILQLL VVPGQASAAP GVVWEPIDGG GLRADASANS SSRDPSIATW NNHLYAAWPH 60 QKGGFGQPEI RVMQWDGSDW SPADDGSGLN FGSNSSAAIL LLQYTKAVCT PSGRKGLHHR 120 SPRLESRKIV ETEADGFRQA ETIRVWTNEA VDMTFVPNGT VFGPRLAVYQ DELYLTWSEQ 180 MVDSPYYSYI PVMKRTVNSA GKVTWANVSG NSGITNTTTS AGSPVLQAYN GLLYAVWRDN 240 NPAQLKVSSF DGSTWSPVGS GNLDKPEGVQ SQSPNLFVYN QKLVAVWNDV KSQGFQWKQR 300 VEEYDGTNWS SADQGLAGTN LGNVTSFATL NNAMYLAWSD VSKIYVSERR EPPAAPTGLQ 360 AVAGNKEAEL SWNLGSGVAN YKIYQGTASG VYRPDPIATV DGTTGHYKVQ GLEGGKTYYF 420 VVTAVNGNGE SSFSVEASAQ LTKQLATVSY VPGDHGTISR TSEQIVDGYP VHGYWGERLK 480 HRETMGDLLI HTPARAGLDR LPQEYPQYGS GDFRNPAYQA ELEDGTRITE LKYDGYRILK 540 GKPPLSGLPA VYTEDESEAE TLELVLKDAY SGLKVVLLYS IFTARNVIIR SARLINEGDK 600 KLRLRRALSA SVDFSGHSDL EMVYLSGAWA REGNMKRRPL EQGETRIDSK RGMSSHQFNP 660 FASLVTPETT ERHGEAFGFS LVYSGGFEAG AEVDSFGSTR FSIGMNSFDF AWQLNPGESF 720 QTPEAVMVYS AQGLGEMSRT YHRLYRTRLC RGKYRDEERP ILVNNWEATY FDFNADKLVS 780 IAEEGAKLGI ELFVLDDGWF GKRDADNSSL GDWYEDRRKL PDGLADVAER INRLGLKFGL 840 WFEPEMISPD SELYRKHPDW CLHVPGRRRS EARWQLVLDY TRQEVRDYIY DSLSAIFSTV 900 PVAYVKWDMN RALTEIGSAA LPPERQAETA HRYVLGLYEL LERITTDFPH ILFESCSSGG 960 GRFDPGMLYY MPQTWTSDNT DAVERLKIQY GTSLVYPVSA IGAHVSAVPN HQVGRITPLD 1020 FRGNVAMSGN FGYELDLTKF TDDEKET |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00060 | FN3 | 8.0e-6 | 353 | 431 | 86 | + Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. | ||
| pfam00041 | fn3 | 2.0e-6 | 355 | 434 | 85 | + Fibronectin type III domain. | ||
| cd00063 | FN3 | 2.0e-8 | 353 | 440 | 94 | + Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. | ||
| pfam02065 | Melibiase | 0 | 719 | 1046 | 328 | + Melibiase. | ||
| COG3345 | GalA | 0 | 459 | 1047 | 594 | + Alpha-galactosidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005515 | protein binding |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001786506.1 | 0 | 485 | 1047 | 1 | 563 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_003014150.1 | 0 | 468 | 1046 | 29 | 617 | glycoside hydrolase clan GH-D [Paenibacillus sp. JDR-2] |
| RefSeq | ZP_04804740.1 | 0 | 467 | 1046 | 28 | 617 | glycoside hydrolase clan GH-D [Clostridium cellulovorans 743B] |
| RefSeq | ZP_04850789.1 | 0 | 464 | 1047 | 24 | 618 | glycoside hydrolase [Paenibacillus sp. oral taxon 786 str. D14] |
| RefSeq | ZP_05373440.1 | 0 | 468 | 1047 | 29 | 617 | glycoside hydrolase clan GH-D [Geobacillus sp. Y4.1MC1] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4fnq_A | 0 | 456 | 1046 | 17 | 616 | A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From Geobacillus Stearothermophilus |
| PDB | 4fnr_D | 0 | 456 | 1046 | 17 | 616 | A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From Geobacillus Stearothermophilus |
| PDB | 4fnr_C | 0 | 456 | 1046 | 17 | 616 | A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From Geobacillus Stearothermophilus |
| PDB | 4fnr_B | 0 | 456 | 1046 | 17 | 616 | A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From Geobacillus Stearothermophilus |
| PDB | 4fnr_A | 0 | 456 | 1046 | 17 | 616 | A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From Geobacillus Stearothermophilus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| melibiose degradation | ALPHAGALACTOSID-RXN | EC-3.2.1.22 | α-galactosidase |
| stachyose degradation | RXN-11501 | EC-3.2.1.22 | α-galactosidase |
