| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s35_79V6.1 |
| Family | PL1 |
| Protein Properties | Length: 370 Molecular Weight: 40054.8 Isoelectric Point: 6.5023 |
| Chromosome | Chromosome/Scaffold: 35 Start: 366064 End: 367600 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 134 | 280 | 5.5e-36 |
| LIQTDHKTLDGRGADVHIAGGACLTAENVSNITIHGISIHDCKPTGPADMRLSPDHIRDRGRTDGDAVTIRGSRDIWLDHNHLYNSADGLVHVVEGSKGI TISNNYFINHNKVMLFGANAADIIDIAMQVTVAFNHFGEGLTQRIPS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 370 Download |
| MASLCTATII LSLIALALLS SWYSSWSSSI FEDSVQNAAQ TVIDRFSRPR STIWLSLDGR 60 LYHRHFNPAA ACNLIDDCWR CDHRWKENRQ ELANCALGFG KNSAGGMNGE VNIVTDNSDD 120 DAINPATGTL RWGLIQTDHK TLDGRGADVH IAGGACLTAE NVSNITIHGI SIHDCKPTGP 180 ADMRLSPDHI RDRGRTDGDA VTIRGSRDIW LDHNHLYNSA DGLVHVVEGS KGITISNNYF 240 INHNKVMLFG ANAADIIDIA MQVTVAFNHF GEGLTQRIPS PTINSKGNKF MAGNTKEVTK 300 CISSNGNTND GGENWNWRSV DDVFHNGAFF VTSGLKDSTS FYSKATSFAA RPAVMVAGMT 360 IDAGPLITP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-13 | 98 | 279 | 217 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-32 | 140 | 290 | 185 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-36 | 133 | 280 | 157 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001764359.1 | 0 | 73 | 367 | 42 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001769269.1 | 0 | 73 | 368 | 5 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001774203.1 | 0 | 73 | 366 | 14 | 357 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001783165.1 | 0 | 73 | 366 | 19 | 362 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001785953.1 | 0 | 73 | 366 | 46 | 382 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 73 | 364 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 73 | 364 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000002 | 99 | 279 | 102 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000006 | 101 | 279 | 19 | 199 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.0001 | 154 | 279 | 94 | 209 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
