| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s7366_1V6.1 |
| Family | GH78 |
| Protein Properties | Length: 409 Molecular Weight: 45825.2 Isoelectric Point: 4.2526 |
| Chromosome | Chromosome/Scaffold: 7366 Start: 7 End: 1233 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH78 | 178 | 339 | 6.4e-21 |
| IGDHQLAKDTARLILDSSVKANGNGRIVHEVTTMGAVSNPGNTQETAHYIALVWELYRWTGDRNILEQNFEYCVKGIDWLLGEMDPDGDLLPSGYGIIEI AGLNMELIDSAVYTAKAVQAAAFMSRELGDEAKAEQYTQLSERIVRAVNDRYWNEREGLYSD | |||
| Full Sequence |
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| Protein Sequence Length: 409 Download |
| MGIHDGQEDV IEKVSNRLAI AKDCEHDWFA LIGTDLPGEQ FDSGQLYGPE FTSGNGRGVK 60 FETAVTLQPQ EQLTFHLLIA GSYASREECE RTYSVISGNF DELLEAKMRA CEAIRERAEL 120 EVEGEPDIND IFAWVKWNNQ WLVQQVDGIG RGLTAGSPTY PWWFGCDNSY SIQGVLAIGD 180 HQLAKDTARL ILDSSVKANG NGRIVHEVTT MGAVSNPGNT QETAHYIALV WELYRWTGDR 240 NILEQNFEYC VKGIDWLLGE MDPDGDLLPS GYGIIEIAGL NMELIDSAVY TAKAVQAAAF 300 MSRELGDEAK AEQYTQLSER IVRAVNDRYW NEREGLYSDA VAPKKDILPK VEFMVSLAEK 360 RGAADYRAYL ERMLEETDDE NADRGWIINK NWVISTPMEA GIADREKGE |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02567 | PLN02567 | 0.009 | 300 | 355 | 56 | + alpha,alpha-trehalase | ||
| pfam04685 | DUF608 | 5.0e-7 | 226 | 333 | 118 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| pfam05592 | Bac_rhamnosid | 7.0e-8 | 223 | 378 | 164 | + Bacterial alpha-L-rhamnosidase. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. | ||
| COG3408 | GDB1 | 1.0e-18 | 112 | 353 | 263 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001786884.1 | 0 | 1 | 409 | 1 | 409 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_003390855.1 | 0 | 20 | 408 | 210 | 598 | Glycogen debranching protein-like protein [Spirosoma linguale DSM 74] |
| RefSeq | ZP_05284961.1 | 0 | 1 | 408 | 182 | 605 | Amylo-alpha-16-glucosidase [Bacteroides sp. 2_1_7] |
| RefSeq | ZP_05543879.1 | 0 | 1 | 408 | 129 | 552 | conserved hypothetical protein [Parabacteroides sp. D13] |
| RefSeq | ZP_06075914.1 | 0 | 1 | 408 | 9 | 432 | conserved hypothetical protein [Bacteroides sp. 2_1_33B] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EY762396 | 54 | 105 | 153 | 5.6 |