| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s9463_1V6.1 |
| Family | GH78 |
| Protein Properties | Length: 145 Molecular Weight: 17079.4 Isoelectric Point: 6.0096 |
| Chromosome | Chromosome/Scaffold: 9463 Start: 319 End: 753 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH78 | 3 | 145 | 4.7e-27 |
| RALKIAHDLGKSEQEAWIRVQIRYLWDEEQEYFISGEARQVSWASQVWMILAEVVDAPLARKLLERLERNENAIGMATPYMVHHYVDALVLSGQREKAME HIRKYWGGMLKNGVDTFWELYDPEDKTFSPYGSNLVNSYCHAW | |||
| Full Sequence |
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| Protein Sequence Length: 145 Download |
| MRRALKIAHD LGKSEQEAWI RVQIRYLWDE EQEYFISGEA RQVSWASQVW MILAEVVDAP 60 LARKLLERLE RNENAIGMAT PYMVHHYVDA LVLSGQREKA MEHIRKYWGG MLKNGVDTFW 120 ELYDPEDKTF SPYGSNLVNS YCHAW 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05592 | Bac_rhamnosid | 0.0004 | 6 | 145 | 155 | + Bacterial alpha-L-rhamnosidase. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001787017.1 | 0 | 1 | 145 | 44 | 188 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | YP_002892250.1 | 0 | 1 | 145 | 360 | 512 | alpha-L-rhamnosidase [Tolumonas auensis DSM 9187] |
| RefSeq | YP_003013794.1 | 0 | 1 | 145 | 348 | 500 | alpha-L-rhamnosidase [Paenibacillus sp. JDR-2] |
| RefSeq | ZP_02084036.1 | 2.94273e-44 | 17 | 145 | 401 | 533 | hypothetical protein CLOBOL_01560 [Clostridium bolteae ATCC BAA-613] |
| RefSeq | ZP_06548708.1 | 9.94922e-44 | 24 | 145 | 388 | 509 | alfa-L-rhamnosidase in L-rhamnose subsystem [Klebsiella sp. 1_1_55] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3cih_A | 0.00000000000002 | 27 | 145 | 498 | 624 | A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From Bacteroides Thetaiotaomicron |
| PDB | 2okx_B | 0.000004 | 27 | 145 | 740 | 864 | A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus Sp. Gl1 At 1.9 A |
| PDB | 2okx_A | 0.000004 | 27 | 145 | 740 | 864 | A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus Sp. Gl1 At 1.9 A |
| Hydropathy |
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