| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s9_110V6.1 |
| Family | PL1 |
| Protein Properties | Length: 552 Molecular Weight: 60213.8 Isoelectric Point: 5.8464 |
| Chromosome | Chromosome/Scaffold: 9 Start: 904779 End: 906649 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 291 | 460 | 0 |
| ITLTDLLWIRSGTTIDGRGFNVTITGKCIVLCGVSNVILHNFQVSTVGESDTVHIYAGSSRIWVDHLTSTDAKLGLVSVLQGSTDVTISNSYLSNYNFNM LLGASDFDKEDAGMRVSVYRNWFQNSMQRMPHCRWGKCHVMNNLYTNWGYYALGARVGGKIYSESNLFVA | |||
| Full Sequence |
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| Protein Sequence Length: 552 Download |
| MELDHANKMS LLSVGVLVLL LSGVRGSADE TDTELDPRSN PEIQHTMTAL ANITDILELV 60 ASEGGVIADD CERQIQTANE TLHWLTDQIP RTPLLETAKF FSSAAKAVSA CNAYLALRAE 120 MCTQEITLNI FGHLQLQDTL PVSTIQISKI ALSTVMQMLT QLSSDAETVV DVEKNVNKTS 180 SDYHHVDGSM SHSNESKLLT PSTDGDDVKE CATINPTNCQ FSACGNGRGL TRCAFGYAAG 240 VTGGLKGISY VVTNNEDNHR KPSLGSLRYG VNQGGQANGG VWITFARSFE ITLTDLLWIR 300 SGTTIDGRGF NVTITGKCIV LCGVSNVILH NFQVSTVGES DTVHIYAGSS RIWVDHLTST 360 DAKLGLVSVL QGSTDVTISN SYLSNYNFNM LLGASDFDKE DAGMRVSVYR NWFQNSMQRM 420 PHCRWGKCHV MNNLYTNWGY YALGARVGGK IYSESNLFVA SRRSEITHWF NGIGTNYDNS 480 IFIKSTKDIF LNGSTLHEFL NPNTTESSDD LNTIYKSDKL YPPAILPATL NKVLPNCVGA 540 VFGQRLLQCS T* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-24 | 240 | 458 | 234 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-34 | 301 | 458 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-45 | 299 | 462 | 178 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY99621.1 | 0 | 211 | 498 | 97 | 407 | hypothetical protein OsI_21600 [Oryza sativa Indica Group] |
| RefSeq | XP_001751580.1 | 1.4013e-45 | 211 | 535 | 4 | 349 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001753505.1 | 0 | 226 | 551 | 1 | 326 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001761530.1 | 0 | 219 | 551 | 1 | 332 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001785953.1 | 0 | 211 | 535 | 42 | 381 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 8e-40 | 230 | 521 | 21 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 8e-40 | 230 | 521 | 21 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-16 | 296 | 458 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000000004 | 299 | 466 | 78 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3zsc_A | 0.0000000000002 | 311 | 460 | 77 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 26 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DC950609 | 220 | 333 | 552 | 0 |
| BJ867600 | 218 | 323 | 539 | 0 |
| BJ867266 | 218 | 321 | 537 | 0 |
| DC937544 | 243 | 28 | 269 | 0 |
| JG594056 | 167 | 257 | 423 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_20455g0010 | ||||
| Selaginella moellendorffii | 115361 | 92002 | 13606 | 13694 | |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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