| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb04g003170.2 |
| Family | CBM43 |
| Protein Properties | Length: 490 Molecular Weight: 53362.5 Isoelectric Point: 5.1028 |
| Chromosome | Chromosome/Scaffold: 4 Start: 2965414 End: 2969728 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 450 | 1.7e-25 |
| WCVLKPSVNLNDPKLADNVNYACSMADCTSLGYKTSCGMLDTRGNISYAFNNYFQKNDQDDVACGFQNLATTTGQDPSTGTC | |||
| GH17 | 30 | 347 | 0 |
| IGANWGTQASHPLPPETVVRMLKDNGFQKVKLFDAEEGTMNALRKSGLEVMVGIPNDLLLTMATSMKAAEKWVDTNVSSYLNDGVSIRYVAVGNEPFLET YNGTFLQTTFPAIRNIQGALIKAGLGNQVKVTCPLNADVYSSSTSKPSDGDFRTDIHDLMLTIVKFLSDNGGAFTVNIYPFISLYIDPNFPVDYAFFEGA SSPIVDGSFTYTNMFDANHDTLIWALKKNGFENLPVIVGEIGWPTDGDRNANAQLAQRFNQGFMTHIASGRGTPMRPGPVDAYLFSLIDEDEKSIQPGNF ERHWGIFTYDGLPKYQLN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 490 Download |
| MDSRSGHGAA VAAVVLVSWL CFAAAGVGAI GANWGTQASH PLPPETVVRM LKDNGFQKVK 60 LFDAEEGTMN ALRKSGLEVM VGIPNDLLLT MATSMKAAEK WVDTNVSSYL NDGVSIRYVA 120 VGNEPFLETY NGTFLQTTFP AIRNIQGALI KAGLGNQVKV TCPLNADVYS SSTSKPSDGD 180 FRTDIHDLML TIVKFLSDNG GAFTVNIYPF ISLYIDPNFP VDYAFFEGAS SPIVDGSFTY 240 TNMFDANHDT LIWALKKNGF ENLPVIVGEI GWPTDGDRNA NAQLAQRFNQ GFMTHIASGR 300 GTPMRPGPVD AYLFSLIDED EKSIQPGNFE RHWGIFTYDG LPKYQLNLGT SNSGGLVRAR 360 GVKYLEKKWC VLKPSVNLND PKLADNVNYA CSMADCTSLG YKTSCGMLDT RGNISYAFNN 420 YFQKNDQDDV ACGFQNLATT TGQDPSTGTC RFGIMIEVDS AFSWRLQGHG SNLLLILLLV 480 LLQLFLSFS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 262 | 339 | 78 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-16 | 368 | 439 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-30 | 368 | 452 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-74 | 30 | 347 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY84415.1 | 0 | 29 | 467 | 34 | 470 | hypothetical protein OsI_05789 [Oryza sativa Indica Group] |
| RefSeq | NP_001045844.1 | 0 | 7 | 467 | 8 | 467 | Os02g0139300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151032.1 | 0 | 33 | 467 | 36 | 471 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
| RefSeq | NP_200617.2 | 0 | 29 | 481 | 21 | 474 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002331390.1 | 0 | 16 | 457 | 1 | 443 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 30 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghr_A | 0 | 30 | 348 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1aq0_B | 0 | 30 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 30 | 348 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 0 | 30 | 348 | 2 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
