y
Basic Information | |
---|---|
Species | Thellungiella halophila |
Cazyme ID | Thhalv10021935m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41849.2 Isoelectric Point: 7.1079 |
Chromosome | Chromosome/Scaffold: 13 Start: 4029188 End: 4031491 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 46 | 377 | 0 |
AACAANTAKVAIVAPHGKTFLVKTAKFTGPCTASRLHFRVNGNVVAPSSPWSNVSDYWLSFYHVHGLKVEGNGQIDGKGAIWWNRCPIQLGFVACTNMLV KGIHLTNSPRSHFELKFCSNVNITGVHISAPESSPNTDGIDISSSTYIYITDTQISVEFNVGDDCIAVESGSSHIYITRVTCGPGHGISIGSLGVNGDQN ATAEEIHVKDSIINSATNGLRIKTWKGAGGYARHISYTNVTLDSTYNPIIIDQQYCPRKKCPNNSKTNANTVKISDVSFTDIKGTIKGNIGVMLNCSTVV GCTGLVLKGINLTSADAAGDITLSMCSNAHGE |
Full Sequence |
---|
Protein Sequence Length: 391 Download |
EYLWILLLLC SSYTVNSQNT YDVTEYGAVG DQKTDDSRAF LEAWAAACAA NTAKVAIVAP 60 HGKTFLVKTA KFTGPCTASR LHFRVNGNVV APSSPWSNVS DYWLSFYHVH GLKVEGNGQI 120 DGKGAIWWNR CPIQLGFVAC TNMLVKGIHL TNSPRSHFEL KFCSNVNITG VHISAPESSP 180 NTDGIDISSS TYIYITDTQI SVEFNVGDDC IAVESGSSHI YITRVTCGPG HGISIGSLGV 240 NGDQNATAEE IHVKDSIINS ATNGLRIKTW KGAGGYARHI SYTNVTLDST YNPIIIDQQY 300 CPRKKCPNNS KTNANTVKIS DVSFTDIKGT IKGNIGVMLN CSTVVGCTGL VLKGINLTSA 360 DAAGDITLSM CSNAHGEVYH TQPPVTCLVP * 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-63 | 17 | 388 | 388 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-63 | 16 | 387 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-66 | 61 | 375 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 8.0e-72 | 17 | 388 | 377 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-77 | 15 | 377 | 366 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62658.1 | 0 | 20 | 389 | 54 | 434 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36306.1 | 0 | 20 | 389 | 123 | 494 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 1 | 388 | 3 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 22 | 388 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 20 | 389 | 17 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-20 | 120 | 332 | 80 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 120 | 332 | 80 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 120 | 332 | 80 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-20 | 120 | 332 | 80 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-20 | 120 | 332 | 80 | 293 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |