| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_025601m |
| Family | PL1 |
| Protein Properties | Length: 367 Molecular Weight: 40989.7 Isoelectric Point: 9.871 |
| Chromosome | Chromosome/Scaffold: 02895 Start: 560804 End: 563413 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 99 | 299 | 0 |
| VWITFQKNMNIQLVKPLLISSFTTLDGRGVDIHITGNACLLVYKATDVIIHGLRIHHCKAVGPASVRGPNGEMVPLGQMDGDAIRLVTASKVWIDHNTLY SCQDGLLDVTRGSTDVTISNNWFKDQDKVMLLGHDDGYLRDKNMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNLYQGWEQYAIGGSMNPSIKSEANYFI A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 367 Download |
| MAVQWNFALA LSIVIFNFIS PTFCVAQKMN PIDSCWRQNR NWRRSRQQLA TCSVGFSGKM 60 TNNIGKDTIR YKVSDPSDDP LNPKQGTLRY GATMITGKVW ITFQKNMNIQ LVKPLLISSF 120 TTLDGRGVDI HITGNACLLV YKATDVIIHG LRIHHCKAVG PASVRGPNGE MVPLGQMDGD 180 AIRLVTASKV WIDHNTLYSC QDGLLDVTRG STDVTISNNW FKDQDKVMLL GHDDGYLRDK 240 NMRVTVVFNH FGPNCNQRMP RVRHGYAHVA NNLYQGWEQY AIGGSMNPSI KSEANYFIAP 300 KSGNKEITWR NGINEKSKPW NFYSVGDVFE NGASFIQTGL SGANPNYNNQ QRFTVANAKS 360 VPFITK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-24 | 117 | 297 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-56 | 104 | 297 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-67 | 106 | 301 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 60 | 366 | 1 | 307 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 8 | 366 | 3 | 356 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 365 | 1 | 340 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 365 | 1 | 338 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 7 | 307 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 366 | 2 | 340 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 366 | 2 | 340 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000000000001 | 115 | 297 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.00000000000001 | 117 | 305 | 85 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jrg_B | 0.00000000000001 | 117 | 305 | 85 | 296 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
