Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_160.19 |
Family | CBM22 |
Protein Properties | Length: 920 Molecular Weight: 101946 Isoelectric Point: 6.2153 |
Chromosome | Chromosome/Scaffold: 160 Start: 322278 End: 326366 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 203 | 339 | 1.1e-32 |
NIILNPNFEDGLNNWSGRGCKAALHDSMADGKIVPQSGKVFACATERTQTWNGLQQEITGRVQRKLAYELAATVRIYGNNVTSATVQVTLWVQAANLREQ YIGIANVQATDKDWAQLRGKFLLNGNPSKVIIYVEGP | |||
CBM22 | 30 | 168 | 3.4e-33 |
NIVVNYDFSSGLHSWHPNCCECFVVSAESGNPHGMPARPGGNYAVVTNRKECWQGLEQDITSRLSPGSTYSISAYVGVWAHAPGSAEVLATLKLEFKDSA TKFLFIGKTTVSKEKWERLEGTFSLSTVADRVIFYLEGP | |||
CBM22 | 374 | 515 | 1.19951e-42 |
NIITNSQLSDAINGWFPLGNCNLSVGTGSPRIIPPMARDSLGLHEPLSGLYILVTNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGSSSPQNVNVAF AVDNQWVNGGQVEINDDRWHELGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 570 | 841 | 0 |
RVIQMQNSFPLGSCINRTNIDNEDFVNFFVKHFNWAVFGNELKWYWTEAQQGNLNYMDADEMLDLCVNNKIETRGHCIFWEVEAMVQQWIRSLDKNNLMT AVQNRLTSLLTRYKGKFRHYDVNNEMLHGSFYQDHLGIDIRANMFKTANQLDPSATLFVNDYHIEDGCDTKSSPEKYIEHILDLQEQGAPVGGIGLQGHI DNPVGPVVASALDKLGILGLPIWFTELDVSSINEHIRGEDLEVMLREAFAHPTVEGIMLWGFWELFMSRENS |
Full Sequence |
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Protein Sequence Length: 920 Download |
MANPQMNNGN DSREAAKQHF ASSSHGWADN IVVNYDFSSG LHSWHPNCCE CFVVSAESGN 60 PHGMPARPGG NYAVVTNRKE CWQGLEQDIT SRLSPGSTYS ISAYVGVWAH APGSAEVLAT 120 LKLEFKDSAT KFLFIGKTTV SKEKWERLEG TFSLSTVADR VIFYLEGPSP GVDLLIHSVA 180 INCSRPGESK SSSTECVTAG DDNIILNPNF EDGLNNWSGR GCKAALHDSM ADGKIVPQSG 240 KVFACATERT QTWNGLQQEI TGRVQRKLAY ELAATVRIYG NNVTSATVQV TLWVQAANLR 300 EQYIGIANVQ ATDKDWAQLR GKFLLNGNPS KVIIYVEGPP PGTDILVNSL AVKHAEKIPP 360 SPAPVIENPG FGVNIITNSQ LSDAINGWFP LGNCNLSVGT GSPRIIPPMA RDSLGLHEPL 420 SGLYILVTNR TQTWMGPAQM ITDKLKLFLT YQVSAWVRIG SGSSSPQNVN VAFAVDNQWV 480 NGGQVEINDD RWHELGGSFR IEKQPSKVMV YIQGPAPGND LMVAGLQIFA VNRVQRFRYL 540 RLQTDKIRKR DVVLKFSGAD ASTLSGSVVR VIQMQNSFPL GSCINRTNID NEDFVNFFVK 600 HFNWAVFGNE LKWYWTEAQQ GNLNYMDADE MLDLCVNNKI ETRGHCIFWE VEAMVQQWIR 660 SLDKNNLMTA VQNRLTSLLT RYKGKFRHYD VNNEMLHGSF YQDHLGIDIR ANMFKTANQL 720 DPSATLFVND YHIEDGCDTK SSPEKYIEHI LDLQEQGAPV GGIGLQGHID NPVGPVVASA 780 LDKLGILGLP IWFTELDVSS INEHIRGEDL EVMLREAFAH PTVEGIMLWG FWELFMSREN 840 SHLVNAEGEI NEAGKRFLAL KQEWLSHARG HIDEQGEFRF RGFHGSYIVQ VLTPSKKFSE 900 SFVVDKGDSS PLVVSINLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 4.0e-18 | 203 | 343 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-21 | 30 | 170 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-29 | 556 | 831 | 297 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 8.0e-74 | 576 | 861 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-74 | 611 | 857 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 1 | 918 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 28 | 918 | 92 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 18 | 918 | 152 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 29 | 523 | 1 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 202 | 528 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-28 | 563 | 835 | 22 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-28 | 563 | 835 | 22 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 3e-28 | 567 | 830 | 5 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 3e-28 | 567 | 830 | 5 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 5e-28 | 567 | 830 | 5 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 624 | 918 | 0 |
EX570691 | 281 | 624 | 904 | 0 |
EB442796 | 298 | 401 | 698 | 0 |
EB442796 | 133 | 59 | 181 | 0.0000000008 |
EB442796 | 116 | 237 | 352 | 0.00000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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