| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna10038.1-v1.0-hybrid |
| Family | GH18 |
| Protein Properties | Length: 1280 Molecular Weight: 140386 Isoelectric Point: 6.7115 |
| Chromosome | Chromosome/Scaffold: 1 Start: 77450 End: 88545 |
| Description | Glycosyl hydrolase family protein with chitinase insertion domain |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH18 | 439 | 685 | 2.1e-37 |
| STLFTHLQCAFAYINSSSYQLLINSSTQQEFSTFTNVVKLKNSKVTTLLSIWGGGEDYSVLFSLFSMLNQSSHRKSFIESSIRTARLYEFDGLDLTGAVP RTVMHTTSLGTFLDEWRAAVVNNVTYPIGSIKKYLNWVHLVAYDYNLPKKENYTHPHAALYDPISNGTNTNSLVKDLISRGLPASKLVLGLPYHGYGWTV PNPIPMYTSGSMWINFDDVEAIKTKVSYAKEMGLLGYNVFQVGNDDN | |||
| GH18 | 101 | 430 | 0 |
| AAYWFPDSGQAVSAINSTLFTHLFCAFADLNPTTYQVAISSANSPQFSTFTQTVQQKNPNVKTLLSIGGGNSSPSTFAAMASQATRRKAFIDSSIKLARN YSFYGLDLDWEYPSSATEMTNFGSLLTEWRSAVANESSTSGKTALLLTAAVFRNADYYSINYPFQAVSSSLDWINVMTYDYYGPSFAEGKTKTYPPAALY NGRSTTLINGDAGIVSWINNAGISTKKIVIGLPFYGYAWRLLNSNNHAFFAPANGSAIGANGDQGYNQIRVLISRGFQTVYNATVVSNYCYNGTTWIGYD DTQSIGAKVSYAKGKSLLGYFAWHTGADTT | |||
| GH18 | 849 | 1136 | 0 |
| NSPQFSTFTQTVQQKNPNVKTLLSIGGGNSSPSTFAAMASQAARRKAFIDSSIKLARNYSFYGLDLDWEYPSSATEMTNFGSLLTEWRSAVANESSTSGK TALLLTAAVFRNADYYSINYPFQAVSSSLDWINVMTYDYYGPSFAEGKTKTYPPAALYNGRSTTLINGDAGIVSWINNAGISTKKIVIGLPFYGYAWRLL NSNNHAFFAPANGSAIGANGDQGYNQIRVLISRGFQTVYNATVVSNYCYNGTTWIGYDDTQSIGAKVSYAKGKSLLGYFAWHTGADTT | |||
| Full Sequence |
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| Protein Sequence Length: 1280 Download |
| MLTTSPTTAI RAEVAAMAAR VEKRRGREAE SGGACSNELS ITSVVKIKRW QELCEPEPDL 60 DRTGGDPGLF ALNFTVECPN VPIRDCHYLN VSAAQTTVVK AAYWFPDSGQ AVSAINSTLF 120 THLFCAFADL NPTTYQVAIS SANSPQFSTF TQTVQQKNPN VKTLLSIGGG NSSPSTFAAM 180 ASQATRRKAF IDSSIKLARN YSFYGLDLDW EYPSSATEMT NFGSLLTEWR SAVANESSTS 240 GKTALLLTAA VFRNADYYSI NYPFQAVSSS LDWINVMTYD YYGPSFAEGK TKTYPPAALY 300 NGRSTTLING DAGIVSWINN AGISTKKIVI GLPFYGYAWR LLNSNNHAFF APANGSAIGA 360 NGDQGYNQIR VLISRGFQTV YNATVVSNYC YNGTTWIGYD DTQSIGAKVS YAKGKSLLGY 420 FAWHTGADTT TWTLSQTGST LFTHLQCAFA YINSSSYQLL INSSTQQEFS TFTNVVKLKN 480 SKVTTLLSIW GGGEDYSVLF SLFSMLNQSS HRKSFIESSI RTARLYEFDG LDLTGAVPRT 540 VMHTTSLGTF LDEWRAAVVN NVTYPIGSIK KYLNWVHLVA YDYNLPKKEN YTHPHAALYD 600 PISNGTNTNS LVKDLISRGL PASKLVLGLP YHGYGWTVPN PIPMYTSGSM WINFDDVEAI 660 KTKVSYAKEM GLLGYNVFQV GNDDNWVLSR AAVMITTESA AESSSDNPPA VKSGYYPPTD 720 DFPPSAINTS FFTHVYYAFL VPSSTLLSIG GGGGDKALSD IFASMVSNPS SLSNFIDSTI 780 EVARKFGFDG LDLDWEYPES PKEMKALGHW LKQWPREQER GPGHKSPSST AHRRHLNPTT 840 YQVAISSANS PQFSTFTQTV QQKNPNVKTL LSIGGGNSSP STFAAMASQA ARRKAFIDSS 900 IKLARNYSFY GLDLDWEYPS SATEMTNFGS LLTEWRSAVA NESSTSGKTA LLLTAAVFRN 960 ADYYSINYPF QAVSSSLDWI NVMTYDYYGP SFAEGKTKTY PPAALYNGRS TTLINGDAGI 1020 VSWINNAGIS TKKIVIGLPF YGYAWRLLNS NNHAFFAPAN GSAIGANGDQ GYNQIRVLIS 1080 RGFQTVYNAT VVSNYCYNGT TWIGYDDTQS IGAKVSYAKG KSLLGYFAWH TGADTTTWTL 1140 SQTGLSVICN GLGIDLDDDD GNRIGYWKHE YCEMRRRRRS RDFAAAPFLD LGLRPPAVVA 1200 HGEPELAVVL AQRNEQFQLA GEAGDLRWGR EGEDAELDAF QEIGERNGVV QFLNVEFRVF 1260 HDWDSGENYT ASLEGLKLG* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02879 | GH18_plant_chitinase_class_V | 3.0e-30 | 708 | 814 | 138 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| smart00636 | Glyco_18 | 4.0e-80 | 99 | 428 | 345 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 2.0e-82 | 442 | 689 | 278 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| cd02879 | GH18_plant_chitinase_class_V | 7.0e-97 | 836 | 1140 | 309 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| cd02879 | GH18_plant_chitinase_class_V | 5.0e-123 | 96 | 428 | 338 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 97 | 428 | 3 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 0 | 836 | 1134 | 36 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 0 | 439 | 692 | 23 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 1e-20 | 711 | 814 | 5 | 135 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 97 | 428 | 3 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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