| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna14033.1-v1.0-hybrid |
| Family | AA1 |
| Protein Properties | Length: 882 Molecular Weight: 98057.6 Isoelectric Point: 9.5307 |
| Chromosome | Chromosome/Scaffold: 3 Start: 27758231 End: 27762535 |
| Description | laccase 17 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 59 | 211 | 7.3e-21 |
| FNAFWDTDNLSPSHVSAIKARHRNVKVGLSLGGDTVAGVSANFTPISINSWVRNAISSIVKITKEYKLDGIDIDYEHFNTDPNTFAECIGRLFFYLKQNK VVSFTSIAPYDDDAVQPYYLALWRKYGHLIDYVNFQFYAYDKGTTVTQFMKYF | |||
| AA1 | 331 | 867 | 0 |
| TRHYTFDVQLQNVKRLCHTKSIVTINGQFPGPRIVAREGDRLLIKVVNHVQSNISIHWHGIRQLQTGWADGPAYITQCPIQTGNSYVYNFTIVGQRGTLW WHAHISWLRSTIYGPLIIIPKRGVPYPFTKPYKEVPIIFGEWWNADTEAVIKQALQTGGGPNVSDAYTINGLPGPLYNCSAKDTFKLKVQAGKTYMLRII NAALNDELFFSIANHTLKVVEADAVYVKPFDTNTILIAPGQTINVLLKTKPSHPNATFFMTARPYVTGLGTFDNSTVAGILEYESTALHSTLPMKKLPLH KPILPVLNDTSFATKFSNKLRSLNTPQFPANVPQKVDKRLFFTIGLGTNPCSQQKHNNQTCQGPNVTMFAASINNISFTMPNTALLQSHFFGQSNGVYSP YFPISPLIPFNYTGAQLNNTNVSNGTKLMVLPFNTSVELVLQDTSILGAESHPLHLHGFNFFVVGQGFGNYDQNKDPKKFNLIDPVERNTVGVPSGGWVA IRFLADNPGVWFMHCHLEIHTSWGLRMAWLVLDGKLP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 882 Download |
| MSLAVAANSK LFREYIGAEG VGITFSDVPI DPGVEFHFLL SFGIDYTTSS RPKPTNGIFN 60 AFWDTDNLSP SHVSAIKARH RNVKVGLSLG GDTVAGVSAN FTPISINSWV RNAISSIVKI 120 TKEYKLDGID IDYEHFNTDP NTFAECIGRL FFYLKQNKVV SFTSIAPYDD DAVQPYYLAL 180 WRKYGHLIDY VNFQFYAYDK GTTVTQFMKY FGTQSSNYKG GKVLVSFGTD QSGGLSPEHG 240 FFDACATLKS QGKLNELDSM QIVVGMVVLI KPGNMQVTII ISNSVFRVRR VTWRRGDTWQ 300 RLDLRGKAGR LFVLCCITLG LIPQLALASI TRHYTFDVQL QNVKRLCHTK SIVTINGQFP 360 GPRIVAREGD RLLIKVVNHV QSNISIHWHG IRQLQTGWAD GPAYITQCPI QTGNSYVYNF 420 TIVGQRGTLW WHAHISWLRS TIYGPLIIIP KRGVPYPFTK PYKEVPIIFG EWWNADTEAV 480 IKQALQTGGG PNVSDAYTIN GLPGPLYNCS AKDTFKLKVQ AGKTYMLRII NAALNDELFF 540 SIANHTLKVV EADAVYVKPF DTNTILIAPG QTINVLLKTK PSHPNATFFM TARPYVTGLG 600 TFDNSTVAGI LEYESTALHS TLPMKKLPLH KPILPVLNDT SFATKFSNKL RSLNTPQFPA 660 NVPQKVDKRL FFTIGLGTNP CSQQKHNNQT CQGPNVTMFA ASINNISFTM PNTALLQSHF 720 FGQSNGVYSP YFPISPLIPF NYTGAQLNNT NVSNGTKLMV LPFNTSVELV LQDTSILGAE 780 SHPLHLHGFN FFVVGQGFGN YDQNKDPKKF NLIDPVERNT VGVPSGGWVA IRFLADNPGV 840 WFMHCHLEIH TSWGLRMAWL VLDGKLPNQK LLPPPLDLPK C* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02191 | PLN02191 | 1.0e-69 | 328 | 855 | 559 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 5.0e-77 | 311 | 857 | 585 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 2.0e-90 | 331 | 855 | 560 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| cd06544 | GH18_narbonin | 2.0e-104 | 11 | 254 | 245 | + Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba. | ||
| TIGR03389 | laccase | 0 | 330 | 864 | 536 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005507 | copper ion binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3sim_B | 0 | 11 | 255 | 2 | 248 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
| PDB | 3sim_A | 0 | 11 | 255 | 2 | 248 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
| PDB | 1asq_B | 0 | 329 | 871 | 1 | 536 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
| PDB | 1asq_A | 0 | 329 | 871 | 1 | 536 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
| PDB | 1asp_B | 0 | 329 | 871 | 1 | 536 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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