Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna19487.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 800 Molecular Weight: 87029 Isoelectric Point: 8.9236 |
Chromosome | Chromosome/Scaffold: 3 Start: 662762 End: 668073 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 392 | 0 |
WSEACNSDGRATVMIPAGTFKLFPVVFSGPCKGPIDFIIKGTLMASTGSSALSSESWINFRNVEQLTVAGGGTLDGQGASVWRLNDCTTNPGCKSLPTSM TFDSVTNASVHDLVSLNSKNTHIKVHGSQRIRFRNIRISAPEDSPNTDGIKIGNSYRIGISRSIIQTGDDCVAILSGSRQIHVTNVFCGPGHGISIGSLG GHAYPEYDVEGIYVRNSVFKGSDNGVRIKTYSRDSKPLTASNIVYEDIHMIDVKNPIIIDQQYCPSSQCNKEGSSSNVQISDVTFRNIWGTSSTKEAVTL KCSKTKPCKNIKMENIKLPYNGPKGPA | |||
GH28 | 453 | 786 | 0 |
SEACNWDGRARVVIPSKTFKLFPVLFSGPCKGRIAFIIKGTLLASNSPSAVSSENWINFENVDQLTVAGGGTLDAQGPSVWSLNDCNTNPGCKALPISMT FNFVSNASVHHLRSFNSQNGHFKVHGCQKIDFRNIRISAPEDSPNTDGIKIGNSYRVRIRHTIIQTGDDCIAIVSGSRKIHISNVFCGPGHGISIGSLGG HAYTEYDVEGIFVKNSVFKKTANGLRIKTYARDSKPLKASNIVFEDINMIDVMYPIIIDQQYCPHNQCDLQDSSSNVQVSDVTFRNIWGTSSSKEAVTLK CSKSKPCKNIVMENIKLPHNGPKGPATSVCSNVI |
Full Sequence |
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Protein Sequence Length: 800 Download |
MTLSISSLVS RSFLILFLLA WIAKGQDLDL FRQTNGVGQP MVFDVMRYGA VADGRTDNSE 60 KFLKAWSEAC NSDGRATVMI PAGTFKLFPV VFSGPCKGPI DFIIKGTLMA STGSSALSSE 120 SWINFRNVEQ LTVAGGGTLD GQGASVWRLN DCTTNPGCKS LPTSMTFDSV TNASVHDLVS 180 LNSKNTHIKV HGSQRIRFRN IRISAPEDSP NTDGIKIGNS YRIGISRSII QTGDDCVAIL 240 SGSRQIHVTN VFCGPGHGIS IGSLGGHAYP EYDVEGIYVR NSVFKGSDNG VRIKTYSRDS 300 KPLTASNIVY EDIHMIDVKN PIIIDQQYCP SSQCNKEGSS SNVQISDVTF RNIWGTSSTK 360 EAVTLKCSKT KPCKNIKMEN IKLPYNGPKG PATTVLRTFL FLFLLAWITK GDDLNPLRVS 420 ERDGRPMVFN VMRYGAVADG RTDNSQAFLK AWSEACNWDG RARVVIPSKT FKLFPVLFSG 480 PCKGRIAFII KGTLLASNSP SAVSSENWIN FENVDQLTVA GGGTLDAQGP SVWSLNDCNT 540 NPGCKALPIS MTFNFVSNAS VHHLRSFNSQ NGHFKVHGCQ KIDFRNIRIS APEDSPNTDG 600 IKIGNSYRVR IRHTIIQTGD DCIAIVSGSR KIHISNVFCG PGHGISIGSL GGHAYTEYDV 660 EGIFVKNSVF KKTANGLRIK TYARDSKPLK ASNIVFEDIN MIDVMYPIII DQQYCPHNQC 720 DLQDSSSNVQ VSDVTFRNIW GTSSSKEAVT LKCSKSKPCK NIVMENIKLP HNGPKGPATS 780 VCSNVIGNSY GSHIPPSCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 9.0e-75 | 464 | 798 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-76 | 416 | 798 | 394 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-82 | 70 | 389 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-88 | 429 | 798 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02188 | PLN02188 | 3.0e-95 | 43 | 392 | 353 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 3e-18 | 131 | 356 | 76 | 294 | C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex |
PDB | 1ib4_B | 1e-16 | 517 | 785 | 76 | 333 | C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex |
PDB | 1ib4_A | 3e-18 | 131 | 356 | 76 | 294 | C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex |
PDB | 1ib4_A | 1e-16 | 517 | 785 | 76 | 333 | C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex |
PDB | 1ia5_A | 3e-18 | 131 | 356 | 76 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |