| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna19625.1-v1.0-hybrid |
| Family | CBM53 |
| Protein Properties | Length: 1123 Molecular Weight: 127653 Isoelectric Point: 6.8304 |
| Chromosome | Chromosome/Scaffold: 3 Start: 487539 End: 494471 |
| Description | starch synthase 3 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 209 | 292 | 2.8e-29 |
| QHIEVFLNRSLSTLNSEDDVVIMGAFNDWRWKSFTIRLIRTNLKGDWWSCQFHVPAEAYKIDFVFFNGKDVYDNNDKKDFCIEI | |||
| CBM53 | 546 | 633 | 1.7e-33 |
| SMVTIFYNPANTVLNGKPEIWFRCSFNHWAHRRGPLPPQKMVPAENGTHVKATVMVPLDAYVMDFVFSESEEGGLFDNKNEMDYHIPV | |||
| CBM53 | 384 | 473 | 1.2e-34 |
| DVVRLYYNRSSGPLANAKELWIHGGHNGWSAGLSIIESLVRSEEKDGDWWYAKVVVPEQAVVLDWVFADGPPQNATVYDNNHRHDFHAIV | |||
| GT5 | 686 | 1118 | 0 |
| SAFVGGLGDVVTSLSRAVQDLNHHVDVILPKYDCLNLSNVKEFQYNRTYSWGGTEIKVWFGKVEGVPVYFLEPQNGLFYKGCIYGCKNDSERFGFFCHAA LEYLLQSGSHPDIIHCHDWSSAPVAWLYKDHYSHYGLSKARIVFTIHNLEFGAHYIGKAVAYSDKSTTVSETYSKEIARNPAVAPHLYKFHGIINGIDQD IWDPYNDGFLPISYTSENVIEGKKAAKEALQQRLGLKTADLPLVGIITRLTQQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHG DRARLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAEAQGLEPNGFSFDGADAAGVDYALNRAISAW YDGQDWFNSLCKTVMEQDWSWNRPALEYMELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1123 Download |
| MEVSLQAHRP LSCRTVFQDR RTNLKLKPVS GFCPHGRYSS WFKGDLTTGV SCKITASSAD 60 FSRRQRKVSS SRPNGPGPKA TVPKPPVETS VPKTSQRNTG DKKGFASSTA SVSGPKVDVK 120 RIDETSRKVA ESSSLSKTSA TGRSFQEVEN GSRDKGIDID KKLSHEASLK LKLEMEEKQR 180 MEEIERLAEE NFSKGNKLFV YPQVVKPDQH IEVFLNRSLS TLNSEDDVVI MGAFNDWRWK 240 SFTIRLIRTN LKGDWWSCQF HVPAEAYKID FVFFNGKDVY DNNDKKDFCI EIESGMDAYA 300 FEDFLLEEKR KELEKLAEEQ AERERQAEEQ RRIEAEKAAR EFDRAEAKAE TERRRKLVQE 360 LAKKAVRSVP DVWYIEPREF KGEDVVRLYY NRSSGPLANA KELWIHGGHN GWSAGLSIIE 420 SLVRSEEKDG DWWYAKVVVP EQAVVLDWVF ADGPPQNATV YDNNHRHDFH AIVPKSIPEE 480 QYWVEEEHQI YRKLQEERRL REEAIRAKAK KTALMKAEMK EQTLRRYLLS QKHVVYTEPL 540 DVQAGSMVTI FYNPANTVLN GKPEIWFRCS FNHWAHRRGP LPPQKMVPAE NGTHVKATVM 600 VPLDAYVMDF VFSESEEGGL FDNKNEMDYH IPVFGGVSKE SPMHIVHITV EMAPIAKASP 660 QINYGWMNFL IVSLAVESVN DVSHISAFVG GLGDVVTSLS RAVQDLNHHV DVILPKYDCL 720 NLSNVKEFQY NRTYSWGGTE IKVWFGKVEG VPVYFLEPQN GLFYKGCIYG CKNDSERFGF 780 FCHAALEYLL QSGSHPDIIH CHDWSSAPVA WLYKDHYSHY GLSKARIVFT IHNLEFGAHY 840 IGKAVAYSDK STTVSETYSK EIARNPAVAP HLYKFHGIIN GIDQDIWDPY NDGFLPISYT 900 SENVIEGKKA AKEALQQRLG LKTADLPLVG IITRLTQQKG IHLIKHAIWR TLERNGQVVL 960 LGSAPDPRIQ NDFVNLANQL HSSHGDRARL CLTYDEPLSH LIYAGSDFIL VPSIFEPCGL 1020 TQLVAMRYGS IPVVRKTGGL YDTVFDVDHD KERAEAQGLE PNGFSFDGAD AAGVDYALNR 1080 AISAWYDGQD WFNSLCKTVM EQDWSWNRPA LEYMELYHAA RK* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 1.0e-141 | 639 | 1120 | 528 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 7.0e-149 | 643 | 1120 | 521 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 4.0e-163 | 643 | 1122 | 518 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-172 | 644 | 1118 | 520 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 68 | 1122 | 1068 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 0 | 690 | 1118 | 17 | 474 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 2r4u_A | 0 | 690 | 1118 | 17 | 474 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 2r4t_A | 0 | 690 | 1118 | 17 | 474 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 2qzs_A | 0 | 690 | 1118 | 17 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3d1j_A | 0 | 643 | 1118 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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