| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna20846.1-v1.0-hybrid |
| Family | GH28 |
| Protein Properties | Length: 346 Molecular Weight: 39291.1 Isoelectric Point: 5.0223 |
| Chromosome | Chromosome/Scaffold: 7 Start: 16693918 End: 16703611 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 108 | 187 | 6.6e-24 |
| HQMKLVSHLEEAHVSEVVVDGAKLNGTTNGIMIKTWQGGSGNASNITFENIDMHNVTNPIIIDQYYCDSKKPCKEQMQKP | |||
| Full Sequence |
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| Protein Sequence Length: 346 Download |
| MEGGFRKQEG VVGILAFEVA YVMSKLVPLW DSLSFEQVER DRKFLPNSVG FKKLVHMMPI 60 SSEDFEHAVC DWIDNGVDAF GWKLSSEEMG KEAKKMKSFV SVTGDLYHQM KLVSHLEEAH 120 VSEVVVDGAK LNGTTNGIMI KTWQGGSGNA SNITFENIDM HNVTNPIIID QYYCDSKKPC 180 KEQMQKPISS YWDPVVGDKF KGNSPSRPRT GILLNGTLHW VRRLEDDSQV IVSLCLADEE 240 VRKIPLPIDL GVGEWHALEL RLLFNDSPCI AHSFITEIVD EFTVTSNDEI WVMNEYGVVE 300 SWTKRKSFSA LECSLLPLDA WNMYNLVFQM LKFVMHDHSL WLVYL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-16 | 117 | 178 | 62 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-17 | 118 | 185 | 75 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-22 | 118 | 183 | 66 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-24 | 118 | 206 | 89 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-27 | 119 | 183 | 65 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000003 | 108 | 173 | 251 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brachypodium distachyon | Bradi1g04640.1.211.284 | Bradi1g04640.1.211.284 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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