Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna24083.1-v1.0-hybrid |
Family | AA2 |
Protein Properties | Length: 1063 Molecular Weight: 116798 Isoelectric Point: 5.8706 |
Chromosome | Chromosome/Scaffold: 6 Start: 35754571 End: 35763006 |
Description | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 40 | 311 | 0 |
LSKIVQDGVRSAIANDSRIAASLLRLHFHDCFVSGCDASILLDDTSTLKGEKNALPNKDSARGYEVIDKIKLALEEACPCTVSCTDILTLAATSAVYFSG GPYWPVALGRRDGLTASIDAANNDLPSPFEPLENITAKFAAKGLDLQDVVVLSGAHTIGFAQCFTFKTRLFNFGDSGKPDPVLDTSTLTKLQRVCPNQAD SDTKLAPLDSVTSTKFDNFYFKRLVNKSGLLQSDQLLMGDNRTASMVISYSRFANLFNKDFGASMVKMANIG | |||
AA2 | 340 | 611 | 0 |
LTKIVQQGVWSAIANDSRIAASLLRLHFHDCFVNGCDASVLLDDTSTLQGEKNAFPNKDSARGFEVIDKIKSNLEEACPSTVSCTDILTLAATSAVYFSG GPYWPVALGRRDGTTASKDAANNDLPSPFEPLENITAKFTAKGLDMKDVVVLSGAHTIGFAQCFTFKPRLFNFDDSGKPDPTLDTSLLTNLQSVCPNQAD SDTKLAPLDPVTSTKFDNVYFKRLVNNSGLLQSDQVLMGDNRTASMVISYSRFPYLFNKDFGASMVKMANIG |
Full Sequence |
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Protein Sequence Length: 1063 Download |
MDHITYKLSY VALLCLLFLS PPFVSSELSY KFYDSSCPNL SKIVQDGVRS AIANDSRIAA 60 SLLRLHFHDC FVSGCDASIL LDDTSTLKGE KNALPNKDSA RGYEVIDKIK LALEEACPCT 120 VSCTDILTLA ATSAVYFSGG PYWPVALGRR DGLTASIDAA NNDLPSPFEP LENITAKFAA 180 KGLDLQDVVV LSGAHTIGFA QCFTFKTRLF NFGDSGKPDP VLDTSTLTKL QRVCPNQADS 240 DTKLAPLDSV TSTKFDNFYF KRLVNKSGLL QSDQLLMGDN RTASMVISYS RFANLFNKDF 300 GASMVKMANI GVLTGQNGQI RRNCRVQLNY KFYDSSCPNL TKIVQQGVWS AIANDSRIAA 360 SLLRLHFHDC FVNGCDASVL LDDTSTLQGE KNAFPNKDSA RGFEVIDKIK SNLEEACPST 420 VSCTDILTLA ATSAVYFSGG PYWPVALGRR DGTTASKDAA NNDLPSPFEP LENITAKFTA 480 KGLDMKDVVV LSGAHTIGFA QCFTFKPRLF NFDDSGKPDP TLDTSLLTNL QSVCPNQADS 540 DTKLAPLDPV TSTKFDNVYF KRLVNNSGLL QSDQVLMGDN RTASMVISYS RFPYLFNKDF 600 GASMVKMANI GVLTGQSGQI RKNCRVALNQ QKTFAETVSA LLWFPSTPGP KPDPTPPPLP 660 PVSHSAHLSQ PESDIRHAPP ETRPDQTRVR VSLQPRCYLD ISIGGELEGR IVIELYNDVV 720 PKTAENFRAL CTGEKGISPT TGVPLHFKGV GFHRIIKGFM IQGGDISAGD GSGGESIYGA 780 KFEDENFEIK HERKGMVSMA NTGPDTNGSQ FFITTTRTPH LDGKHVVFGR VVKGLGVARS 840 IEHVIAKDDG EHVPTQEAVI AECGELAEGE DDGVCNFFKD GDVYPDWPVD LDEKHEEVSW 900 WVVAVNAIKA LGNEQFKKQD YKMALRKYRK ALRYLDVCWE LEDINEYNSS SLRQTKSQIF 960 TNSSACRLKL GDLEGALLDT DFALRDWEDN VKAMFRQGQT YMALNDIDSA VESFKKALEL 1020 EPNDGGIKKE LQVAKKKVRE LHMFLDLLSS QWLFTPNGRF EG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd01926 | cyclophilin_ABH_like | 2.0e-78 | 695 | 864 | 170 | + cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. | ||
PLN03030 | PLN03030 | 6.0e-82 | 332 | 624 | 298 | + cationic peroxidase; Provisional | ||
PLN03030 | PLN03030 | 3.0e-84 | 9 | 324 | 325 | + cationic peroxidase; Provisional | ||
cd00693 | secretory_peroxidase | 7.0e-154 | 27 | 326 | 300 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
cd00693 | secretory_peroxidase | 3.0e-159 | 327 | 626 | 300 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. |
Gene Ontology | |
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GO Term | Description |
GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
GO:0004601 | peroxidase activity |
GO:0005515 | protein binding |
GO:0006457 | protein folding |
GO:0006979 | response to oxidative stress |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1iip_A | 0 | 675 | 1039 | 1 | 355 | A Chain A, Solution Structure Of Msin3a Pah1 Domain |
PDB | 1ihg_A | 0 | 675 | 1039 | 1 | 355 | A Chain A, Bovine Cyclophilin 40, Monoclinic Form |
PDB | 1qgj_B | 0 | 327 | 629 | 1 | 300 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1qgj_B | 0 | 27 | 326 | 1 | 297 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1qgj_A | 0 | 327 | 629 | 1 | 300 | A Chain A, Arabidopsis Thaliana Peroxidase N |