| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna25508.1-v1.0-hybrid |
| Family | CBM22 |
| Protein Properties | Length: 527 Molecular Weight: 59216.4 Isoelectric Point: 6.6323 |
| Chromosome | Chromosome/Scaffold: Start: 6219291 End: 6221278 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM22 | 2 | 115 | 7.8e-22 |
| NPEFNNGLKGWSSFGNAKLEHKESQGNKFLVALSRSQPHDSMSQKVYLQADKLYTFSAWIQASSGSGIPIAAMFKTASGFLSAGQVIAESSCWSMLKGGL TVEASGDAELYFES | |||
| GH10 | 175 | 436 | 0 |
| KYPSFPFGCSMTKLILNNPAHQKWFTSRFRVTTFGDEMKWYSTEYVQGHEDYSVADAMLQFAQQNNIAVRGHNVLWDDPQYQLGWVKSLDAQQLESATNK RLNSVMQRYKGKVIAWDVVNENLHFNFFESKMGPNASAIFYNWATKADGGTPLFLNDFNTIEESRDELSSPAKYLQKLREIQSFPGNEGGRYGIGLESHF DSSIPNIPYIRASLDTLAAAKVPIWITELDVSSHLDQPLYLEQLLRELHSHPQIQGIVIWGG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 527 Download |
| MNPEFNNGLK GWSSFGNAKL EHKESQGNKF LVALSRSQPH DSMSQKVYLQ ADKLYTFSAW 60 IQASSGSGIP IAAMFKTASG FLSAGQVIAE SSCWSMLKGG LTVEASGDAE LYFESKNTSV 120 EIWVDSISLQ PFTKNQWKSH QDQSIAMNRK RKVRIQAVDA RGSPLPNATI SIQQKYPSFP 180 FGCSMTKLIL NNPAHQKWFT SRFRVTTFGD EMKWYSTEYV QGHEDYSVAD AMLQFAQQNN 240 IAVRGHNVLW DDPQYQLGWV KSLDAQQLES ATNKRLNSVM QRYKGKVIAW DVVNENLHFN 300 FFESKMGPNA SAIFYNWATK ADGGTPLFLN DFNTIEESRD ELSSPAKYLQ KLREIQSFPG 360 NEGGRYGIGL ESHFDSSIPN IPYIRASLDT LAAAKVPIWI TELDVSSHLD QPLYLEQLLR 420 ELHSHPQIQG IVIWGGRGPQ GCYRMCLTDE NFNNLPTGDV VDKLLREWGY WTSDSDSFTT 480 DNNGYFEASL PHGDYDVKIS HYSAVDSSRV HKLNVASTTR SLQLIV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 8.0e-6 | 1 | 119 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-33 | 211 | 456 | 276 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-51 | 171 | 435 | 286 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-78 | 212 | 461 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ta3_B | 7e-26 | 181 | 435 | 17 | 269 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1tux_A | 9e-25 | 181 | 465 | 18 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1nq6_A | 1e-23 | 181 | 435 | 15 | 269 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2bnj_A | 4e-22 | 181 | 467 | 18 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1i1x_A | 1e-21 | 181 | 467 | 18 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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