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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna28438.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 569 Molecular Weight: 61673.4 Isoelectric Point: 9.1709 |
Chromosome | Chromosome/Scaffold: 6 Start: 36784113 End: 36786762 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 399 | 521 | 1.9e-33 |
PLSILSDGTKACVSNITVRDVKLQNTLNGVRIKTWQGGSGSVKNVMFANIQVSEVEFPIMIDQFYCDKGHCANKTSAVAVSGINYVNIQGTYTSKPAHFA CSDSIPCTGVSLDTIHLKSVQSG | |||
GH28 | 113 | 298 | 1.30321e-43 |
AAACKVQASTVTVPSGSVFLVKPISFSGPNCQPHIVFQLDGKIIAPTGAGAWGSGLLQWLEFTKLQRLTIRGKGVIDGQGAVWWNDSPTYNPTDETADNS TEDSQTVDSYNGKMPSTKPTALRFYGSNGVTVTGITIQNSPQAHLKFDSCTNVQVSAVTISSPGDSPNTDGIHLQNSQDVAISGAS |
Full Sequence |
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Protein Sequence Length: 569 Download |
MRTFKLSSLA WIMLIAFSIW SSSLLETCEA RKGKHHQWRK HRGTKRGNGG RCPHHHHPSG 60 HSVSVLRSDN YITEEDTEVS AAQKSGAVYN VLDYGAKGDG KADDTKAFVA AWAAACKVQA 120 STVTVPSGSV FLVKPISFSG PNCQPHIVFQ LDGKIIAPTG AGAWGSGLLQ WLEFTKLQRL 180 TIRGKGVIDG QGAVWWNDSP TYNPTDETAD NSTEDSQTVD SYNGKMPSTK PTALRFYGSN 240 GVTVTGITIQ NSPQAHLKFD SCTNVQVSAV TISSPGDSPN TDGIHLQNSQ DVAISGASLA 300 CVSRWRRLLS FPDDSTGFQD GFSPSRTGRR QVFRPTLINH GVFRPELQSG RKTCRRPILE 360 GEKPSWKPVL SSGKERSRRR SETAENGRSP HFKPECGRPL SILSDGTKAC VSNITVRDVK 420 LQNTLNGVRI KTWQGGSGSV KNVMFANIQV SEVEFPIMID QFYCDKGHCA NKTSAVAVSG 480 INYVNIQGTY TSKPAHFACS DSIPCTGVSL DTIHLKSVQS GKRLYDPFCW EAYGELKTNT 540 VPPIDCLMKG KPSSSSSSIQ SEGGGYSC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-27 | 401 | 515 | 116 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-27 | 121 | 294 | 175 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-28 | 401 | 516 | 117 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-29 | 121 | 297 | 177 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-33 | 397 | 547 | 156 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000000008 | 90 | 284 | 29 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000000008 | 90 | 284 | 29 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000000008 | 90 | 284 | 29 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000000008 | 90 | 284 | 29 | 241 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2iq7_G | 0.000003 | 397 | 492 | 197 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |