| Basic Information | |
|---|---|
| Species | Fragaria vesca |
| Cazyme ID | mrna30870.1-v1.0-hybrid |
| Family | GH18 |
| Protein Properties | Length: 647 Molecular Weight: 70828.8 Isoelectric Point: 7.2422 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3307202 End: 3311982 |
| Description | Glycosyl hydrolase family protein with chitinase insertion domain |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH18 | 1 | 260 | 3.36312e-44 |
| MASQATRRKAFIDSSIKLARNYSFYGLELDWEYPNSTTEMTNFGSLLTEWRSAVANESSTSGKTALLLTAAVFRNADYYSIKYPFQAVSSSLDWINVMTR DYYGSSWAEGIKNTYPPAALYSDGSTSLFNGDGSTSLFNGDAGIVSWINTAGISTKKIVISLPFYGYVWRLLNPNNHGFFAPANGSAIIADGKGYNQIRV LISQGFQTVYNATVVSNYCYNGTTWIGYDDTQSIGAKVSYAKGKSLLGYIALHTGADTTT | |||
| GH18 | 289 | 616 | 0 |
| YYPPTDDFPPSAINTSFFTHVYYAFLVPRNVTFKFELSNETTLLLSNFTTALRHKTPQVKTLLSIGGGGGDKALSDIFASMVSNPSSRSNFIDSAIEVAR KFGFDGLDLDWEYPESPKEMKALGHLLKQWRREIKKEAQATNRPPLLLTAAVYFSAEFFLDPVIRTYPIKYMEKYLDWANVMCFDYHGAWSNITGPNAPL FDPNSNVNSVYGLRSWINGGMSPSKLVMGLPLYGRTWELKDPKENGIGSIAIGPGPGGGALGFNELEILNKVSSATVVYDADTVSVYSFNGSSWIAFDDT CTTTSKIGFAQALGLRGYFFWAIVHDSN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 647 Download |
| MASQATRRKA FIDSSIKLAR NYSFYGLELD WEYPNSTTEM TNFGSLLTEW RSAVANESST 60 SGKTALLLTA AVFRNADYYS IKYPFQAVSS SLDWINVMTR DYYGSSWAEG IKNTYPPAAL 120 YSDGSTSLFN GDGSTSLFNG DAGIVSWINT AGISTKKIVI SLPFYGYVWR LLNPNNHGFF 180 APANGSAIIA DGKGYNQIRV LISQGFQTVY NATVVSNYCY NGTTWIGYDD TQSIGAKVSY 240 AKGKSLLGYI ALHTGADTTT WTLSQTVMIA TESAAESSSE NPPAVKSGYY PPTDDFPPSA 300 INTSFFTHVY YAFLVPRNVT FKFELSNETT LLLSNFTTAL RHKTPQVKTL LSIGGGGGDK 360 ALSDIFASMV SNPSSRSNFI DSAIEVARKF GFDGLDLDWE YPESPKEMKA LGHLLKQWRR 420 EIKKEAQATN RPPLLLTAAV YFSAEFFLDP VIRTYPIKYM EKYLDWANVM CFDYHGAWSN 480 ITGPNAPLFD PNSNVNSVYG LRSWINGGMS PSKLVMGLPL YGRTWELKDP KENGIGSIAI 540 GPGPGGGALG FNELEILNKV SSATVVYDAD TVSVYSFNGS SWIAFDDTCT TTSKIGFAQA 600 LGLRGYFFWA IVHDSNWKIS AQGNVTSPNY HPRLKGAASL VLKIPA* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00636 | Glyco_18 | 4.0e-53 | 1 | 265 | 275 | + Glyco_18 domain. | ||
| pfam00704 | Glyco_hydro_18 | 2.0e-65 | 295 | 611 | 323 | + Glycosyl hydrolases family 18. | ||
| smart00636 | Glyco_18 | 7.0e-73 | 285 | 611 | 341 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 3.0e-74 | 1 | 263 | 267 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| cd02879 | GH18_plant_chitinase_class_V | 4.0e-125 | 282 | 620 | 341 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 1 | 257 | 86 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_D | 0 | 285 | 620 | 5 | 336 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 1 | 257 | 86 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 285 | 620 | 5 | 336 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_B | 0 | 1 | 257 | 86 | 330 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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