Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31031.1-v1.0-hybrid |
Family | PL4 |
Protein Properties | Length: 620 Molecular Weight: 70191.2 Isoelectric Point: 8.2901 |
Chromosome | Chromosome/Scaffold: 1 Start: 2221121 End: 2223068 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 42 | 277 | 0 |
AVEIKMVKGGVVLDNKLVQVTFSRPGGDVIGIRYGGIDNLLETNNEEGNRGYWDVVWNKPGEAKNTQYKLQGTRFKVITARPDQVEISFTTKYNANLHRG VSVPVNVDKRYIMQRGRSGFYTYAIFERLEGWPGGDMETLRVAYKLKQANFRYMALSDTRQRFMPTAEDRARGRPLAFKEAVLLSKEASSPEFVGEVDDK YQYSAEDKDIKVHGWISMAPPVGFWMITPSDESQVG | |||
PL4 | 280 | 619 | 0 |
FQEGEAWKKVFGPVFVYLNSAAPSSHSSSMISTLWNNAKDQMLEEVKSWPYNFISSQDYPSSNQRGSVSGQLPVHDRYVKGLHRANSAYVGLAAPGEVGT WQRESKGYQYWTQTDEKGYFNIENVRPGHYSLYASVPGIVGDYKYEFDITIEPGSKIELASITYKPPRIGPTLWEIGIPDRSAAEFYIPDPYPTLMNKLY KGSDLDKFRQYGLWSRYYELYPHNDLIYNVGVNNYSDDWFYAQVTRSVGNGRYVGTTWQIQFELDNVVNPGNYTLQLALASATYAELQVRINHLNAERPL FSTGLIGDDNAIARHGIHGLYWFWSINVPSILLREGSNTI |
Full Sequence |
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Protein Sequence Length: 620 Download |
MRKSGGGNLR RLLFGVIVLC CFCFVDVVAR SPRGYGLPRQ DAVEIKMVKG GVVLDNKLVQ 60 VTFSRPGGDV IGIRYGGIDN LLETNNEEGN RGYWDVVWNK PGEAKNTQYK LQGTRFKVIT 120 ARPDQVEISF TTKYNANLHR GVSVPVNVDK RYIMQRGRSG FYTYAIFERL EGWPGGDMET 180 LRVAYKLKQA NFRYMALSDT RQRFMPTAED RARGRPLAFK EAVLLSKEAS SPEFVGEVDD 240 KYQYSAEDKD IKVHGWISMA PPVGFWMITP SDESQVGLNF QEGEAWKKVF GPVFVYLNSA 300 APSSHSSSMI STLWNNAKDQ MLEEVKSWPY NFISSQDYPS SNQRGSVSGQ LPVHDRYVKG 360 LHRANSAYVG LAAPGEVGTW QRESKGYQYW TQTDEKGYFN IENVRPGHYS LYASVPGIVG 420 DYKYEFDITI EPGSKIELAS ITYKPPRIGP TLWEIGIPDR SAAEFYIPDP YPTLMNKLYK 480 GSDLDKFRQY GLWSRYYELY PHNDLIYNVG VNNYSDDWFY AQVTRSVGNG RYVGTTWQIQ 540 FELDNVVNPG NYTLQLALAS ATYAELQVRI NHLNAERPLF STGLIGDDNA IARHGIHGLY 600 WFWSINVPSI LLREGSNTI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0001 | 381 | 438 | 60 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 7.0e-29 | 343 | 441 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-39 | 453 | 619 | 168 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-47 | 51 | 298 | 279 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-74 | 52 | 238 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |