LOCUS       NC_003212               5429 bp    DNA     linear   CON 17-FEB-2020
DEFINITION  Listeria innocua Clip11262, complete sequence.
ACCESSION   NC_003212
VERSION     NC_003212.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA3138320
            Assembly: GCF_000195795.1
KEYWORDS    RefSeq.
SOURCE      Listeria innocua Clip11262
  ORGANISM  Listeria innocua Clip11262
            Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1
  AUTHORS   Glaser,P., Frangeul,L., Buchrieser,C., Rusniok,C., Amend,A.,
            Baquero,F., Berche,P., Bloecker,H., Brandt,P., Chakraborty,T.,
            Charbit,A., Chetouani,F., Couve,E., de Daruvar,A., Dehoux,P.,
            Domann,E., Dominguez-Bernal,G., Duchaud,E., Durant,L., Dussurget,O.,
            Entian,K.D., Fsihi,H., Garcia-del Portillo,F., Garrido,P.,
            Gautier,L., Goebel,W., Gomez-Lopez,N., Hain,T., Hauf,J., Jackson,D.,
            Jones,L.M., Kaerst,U., Kreft,J., Kuhn,M., Kunst,F., Kurapkat,G.,
            Madueno,E., Maitournam,A., Vicente,J.M., Ng,E., Nedjari,H.,
            Nordsiek,G., Novella,S., de Pablos,B., Perez-Diaz,J.C., Purcell,R.,
            Remmel,B., Rose,M., Schlueter,T., Simoes,N., Tierrez,A.,
            Vazquez-Boland,J.A., Voss,H., Wehland,J. and Cossart,P.
  TITLE     Comparative genomics of Listeria species
  JOURNAL   Science 294 (5543), 849-852 (2001)
   PUBMED   11679669
REFERENCE   2  (bases 1 to 5429)
  AUTHORS   Glaser,P., Frangeul,L. and Rusniok,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2001) Glaser P., Institut Pasteur, Genomique des
            Microorganismes Pathogenes, 25 rue du Docteur Roux, 75724 Paris
            Cedex 15, FRANCE
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/17/2020 14:48:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
            Annotation Method                 :: Best-placed reference protein
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
            Genes (total)                     :: 3,185
            CDSs (total)                      :: 3,096
            Genes (coding)                    :: 3,058
            CDSs (with protein)               :: 3,058
            Genes (RNA)                       :: 89
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 21 of 38
            Pseudo Genes (internal stop)      :: 5 of 38
            Pseudo Genes (multiple problems)  :: 2 of 38
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence was derived from
            AL592022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            E-mail: pglaser@pasteur.fr
            Phone: +33 (0)1 45 68 89 96, Fax: +33 (0)1 45 68 87 86.
            Annotation Pipeline (PGAP)
            set; GeneMarkS-2+
            repeat_region
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Listeria innocua Clip11262"
                     /mol_type="genomic DNA"
                     /strain="Clip11262"
                     /db_xref="taxon:272626"
     gene            complement(1..3261)
                     /locus_tag="LIN_RS09480"
                     /old_locus_tag="lin1839"
     CDS             complement(1..3261)
                     /locus_tag="LIN_RS09480"
                     /old_locus_tag="lin1839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH94"
                     /protein_id="WP_010990982.1"
                     /translation="MTMLKEIKKADLSAAFYPSGELAWLKLKDIMLNQVIQNPLENRLS
                     QIYVRAHVGDKIEIYPLLSRDAEVGFNENGVEYRGVVGPFRYSVQMHFHTRGWFYDVTV
                     DGDLEFDLVYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEGATGFTVQARQNQPQNERFP
                     AVQIGALTKIVGYATDGFDIYGTNYKLTSELANLKEKSLPSRVYQYEFAQISLQTELFT
                     NHGETIFYGYATENQPKASGAPFENLAELKSNISEQPYQPSTKAILNKHIGTPITGETI
                     SDSWLQENFPDRIQEEQQNGALLSFFTPNYAHVVMREKEAELERPHGSILLDKVDVLNP
                     EATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDSELRLLGV
                     PSVWETSTNYSTWYYQWNGDLITVQTTLTADSKEAFVTVHSEKGHSYKLVLTNQVTMGT
                     NEYDTTVKKEIKDGIVTYFPAEDSPILETYPALQFRVDGTYNELTDERYFAKDYVGTAG
                     LDVFVFEPSDKATFHVQAKLSDEFSKPTEDLEANNKVIRASYDELTAQFHLNHQSTTAE
                     KLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATGNKAVLRKLVLT
                     IFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYLEMSGDAGILEEAIP
                     FVDRESKTFTKEQGTLLEHIELAVKTIEARFMKGTALSNYGDGDWDDTLQPANAQLKKN
                     MVSSWTVALTYQTFKRLAAFLPVGEKYETLAKNVQADFAKYMTNDTDVIPGFLYLEEGK
                     APVWMIHPEDKETNIKYRLIPLTRSVISELVDKKQASRNFEIIGEHLLHPDGVRLMSEP
                     AHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIGDKSAWHMLDVINPINI
                     KEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFGRVKEGSIPVKGGWRIYSSGPGIYLH
                     QLISSVLGIRQTEDALIFDPILPEELDGLECHIELDNYPLDLTFESADEGSIVVNGEKQ
                     PVENGANLYRTGALILPKKNLTTKCSQITIKFQKNNRL"
     gene            complement(3258..5429)
                     /locus_tag="LIN_RS09485"
                     /old_locus_tag="lin1840"
     CDS             complement(3258..5429)
                     /locus_tag="LIN_RS09485"
                     /old_locus_tag="lin1840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GH3"
                     /protein_id="WP_010990983.1"
                     /translation="MKQEKVQELVSQMTLDEKIAQCLQLSPFLFKGTNKNAELTGPLLQ
                     EMKLTDAHTENAGSVLGSSSALDMIGIQEAYLKTNRLGIPLVFMADVIHGYKTVFPIPL
                     ALGCSFDRETVRVMAEVSALEATADGHHVTFSPMLDLVRDPRWGRVMESTGEDPFLNSE
                     LGKAMVDGYQGDASKLNENLEQMAACVKHFAAYGAAEAGLEYNTVNMSTRELYQNYLPA
                     YNAAIQAGAKLVMTAFNVVDGIPATMNKWLNRDVLRGEMEFDGVLISDWGAVAEVINHG
                     TARNPKEAAQFSMEAGVDLEMMTTCYIHELKGLIEEGKLSENLLDEAVLRMLNLKNDLG
                     LFEDPYRGLKNNDRTKDILTDESRGKARAAGVESAVLLENKSRLLPLAKEAKIALVGPL
                     ATSPDILGGWNVYGEEKDGINVETGLREVFETVEVVSTEYTELSEEDKVAVKAAVQNMD
                     VVVLALGEKNEWGGEAGSLATIRLPEAQYQLAKFVQTLGKPVVITLFNGRPLEVKELAE
                     SSDALLELWFPGTEAGRVTADLLSGASNPSGKLSMSFPQTTGQIPVYYNHLRTGRPQTP
                     ENKGERYVSHYLDIPNEPFYPFGYGKSYSEFELKTSSLPKELNLGESLHVEVTIKNISD
                     IAGKEVIQVYLQDVTASISRPVKELKAFEKVALQAGEEKTVTFELTSEAFSFYNHQLEK
                     VQEPGLHRVFVGTSSEDVDVFEVEVGGYV"
ORIGIN
        1 ttagagacgg ttattttttt gaaatttaat cgtgatttgt gaacattttg tcgttaaatt
       61 ctttttaggt aaaatgagtg cgccagttcg gtacaaattc gctccatttt caactggttg
      121 tttttcacca ttcacgacaa tagaaccctc atccgcactt tcgaaagtaa gatcaagcgg
      181 ataattatct agttcaatat gacattctaa tccatctaat tcttcaggca aaatcggatc
      241 aaaaataagc gcatcttccg tttgacgaat accaagaaca gaacttatta attgatgtaa
      301 atagattcct ggaccgctag agtaaatccg ccagccgcct ttcaccggaa tactgccttc
      361 tttcacacga ccaaactcat tttgcgcctg atagcgatct aaaaacgctg catcagaact
      421 actgaaataa gtattacttt gacgaagtgc cgcatttggg acaacttctt taatattgat
      481 tggattaatg acatcaagca tatgccaagc ggatttatcg ccaattttag ctaaagcttc
      541 aatataacga atatgcgcat gcacgtattg caaaccaact tctcggccaa aattggctgc
      601 ttgctctgcc cgtttaaaat gagtacttac accaccagca taatgcgctg gctcgctcat
      661 taatcttacg ccatctggat gaagtaaatg ctcaccaata atttcaaaat tacgactggc
      721 ttgcttttta tcgactaatt cagaaattac acttcttgtc agtggtatta agcgatattt
      781 aatattcgtt tctttgtctt ctgggtgaat catccataca ggtgcttttc cttcttctaa
      841 ataaaggaaa cctggaataa catcggtatc atttgtcata tatttcgcaa agtccgcttg
      901 aacatttttt gctaatgttt cgtatttctc acctactggt aaaaatgcag ctaaacgttt
      961 aaatgtttga taagttagcg cgaccgtcca gctggatacc atgtttttct tcagctgggc
     1021 attagctggt tgaagtgtgt catcccagtc accatcgccg taattagaaa gagccgttcc
     1081 tttcataaag cgtgcttcga tcgttttcac tgcgagttca atgtgttcaa gaagagttcc
     1141 ttgctctttc gtaaaggttt tcgattcgcg gtcaacaaaa ggaatagctt cttctaaaat
     1201 ccctgcatcc ccgctcattt ccaagtaatc accaataatt ttcagtggcc aaacaataac
     1261 atcgccgtgg ctttcttctt gctgaatcga tgtatattta tcaaacataa accactgtgg
     1321 ccaatcacca gtatcttgat attgatgaga aaaaatggtc aacactagct tacgtaaaac
     1381 agccttattg cccgttgcaa ggaaaaattc aaatggacct tgactcacat cacgcgtacc
     1441 ccaagccgct ccgctgtact gctctaaccc atgaggtgaa gcatagtgaa ccaacatttg
     1501 atgcgcatac caataaaccg ttaaattcag tttctccgct gttgtacttt gatgatttaa
     1561 atggaactga gcagttaatt cgtcatagct agcgcgaatt actttgttgt ttgcttctaa
     1621 atcctcagtt ggtttcgaga attcatcgct gagttttgct tgaacatgga aagtagcttt
     1681 atcacttggt tcaaaaacaa acacatccaa acccgctgtt cccacgtaat ctttcgcaaa
     1741 ataacgttcg tcagtcagtt cattataagt tccatctacg cggaattgaa gtgccggata
     1801 ggtttctaaa atcggcgagt cttctgctgg gaaataagtg acgattccgt ctttgatttc
     1861 ttttttcacg gtagtatcat attcatttgt ccccatagtt acttgatttg ttaagactaa
     1921 tttatatgaa tgaccttttt ccgaatgaac ggtgacgaat gcctctttac tatcagcagt
     1981 taaggtggtt tgtaccgtga ttaggtcgcc gttccactga taataccaag ttgagtaatt
     2041 cgtactagtt tcccagacag acggtacgcc gagcagtcga agttcggaat ctaattcgat
     2101 ataaattctt aatccgcttg tttgaagaat attgagcgga ttacgcgcgt ggctattcca
     2161 tttgttcata ttcgtatttc cagcaactaa ttgtgataaa aatgccccgt acatgtacgt
     2221 tgttgctgaa agagtcgctt ctggatttaa cacatcgact ttatcaagca aaatactgcc
     2281 atgcgggcgt tctaattctg cttctttttc gcgcatcact acatgtgcat agtttggtgt
     2341 gaaaaaggaa agcagtgcgc cgttttgttg ttcttcttga atccggtctg ggaagttctc
     2401 ttgaagccag ctgtcagaaa ttgtttcgcc ggtaattggt gttcctatat gtttgtttaa
     2461 tatggcttta gtacttggtt gataaggttg ctctgaaata ttacttttta gttcggctaa
     2521 attttcgaat ggtgctccag atgcttttgg ttgattttct gttgcatacc cgtaaaagat
     2581 tgtttcaccg tgattagtaa atagctctgt ttgtaaggag atttgagcga attcatattg
     2641 gtagactcgg cttggcaatg atttttcctt aaggttagct agttcgctag tcagtttata
     2701 attagtccca taaatatcaa aaccatctgt tgcataccct acaattttcg ttaatgctcc
     2761 aatttgaact gctggaaaac gctcattttg aggttgattt tgacgtgctt gaacagtgaa
     2821 accagtcgcg ccttctgtca catgataatc aatatattgc gacatataag cttcatttgt
     2881 tctcactgcc gcttgttctg caagccccaa gtcttgtaag taaacaagat caaactcaag
     2941 atcaccatcc actgtgacat cataaaacca accgcgcgta tgaaaatgca tttgcacgct
     3001 ataacgaaat ggtccaacta caccgcgata ctccacgccg ttttcattaa aaccaacttc
     3061 agcatctctg ctaagtagtg gataaatttc tattttatct cctacatgcg cgcgtacata
     3121 tatttgcgat aagcgatttt ctaatggatt ttgaatcact tgatttagca taatatcttt
     3181 taattttagc caagcaagct ccccgctcgg ataaaatgcg gctgataaat ccgctttttt
     3241 aatttctttt aacattgtca cacatatcca cccacttcca cttcaaaaac gtctacatct
     3301 tcactactag tcccaacaaa aacacgatga agtcccggtt cttgcacttt ttcaagttga
     3361 tggttataga atgaaaatgc ctcgcttgtt aattcaaatg taactgtttt ttcttcgcca
     3421 gcttgaagcg ccactttttc aaaagctttt aattctttga caggccgtga aatgctcgct
     3481 gtcacatctt gtaaatacac ttggattact tctttcccag caatatcact aatattttta
     3541 atggttactt ctacatgtag tgattcgcct agatttagtt ctttcggaag actgcttgtt
     3601 tttaactcga attcgctata actttttccg taaccaaatg gataaaatgg ttcatttgga
     3661 atatcaagat aatgcgacac ataacgttcg cctttatttt ccggtgtttg tggtcgtcca
     3721 gtgcgtaaat gattataata aactggaatt tgccccgttg tttgcgggaa tgacatggat
     3781 aatttcccgg aaggattact tgcaccactt aacaaatctg cagtaacacg acctgcttct
     3841 gttcccggga accataattc aagaagagca tcactagatt ctgctaactc tttcacttca
     3901 agcggtctac cattaaataa tgtaataaca actggttttc ctagtgtttg aacgaatttc
     3961 gctaattgat attgtgcttc tggtaaacga atagtagcaa gacttcctgc ttccccgccc
     4021 cattcatttt tttcacctag cgcaagtacg acaacatcca tattctgtac tgccgctttc
     4081 actgccactt tgtcttcttc cgacaattca gtgtactccg ttgaaacaac ctcgactgtt
     4141 tcaaatactt cacgtaaccc tgtttcaaca ttgatgccat ctttttcttc gccgtataca
     4201 ttccaaccgc cgagaatatc aggtgacgtt gcaagcggac caaccaaggc aatttttgct
     4261 tctttagcca gtggaagtaa tcggcttttg ttttctaata acacagcgga ttcaacgcct
     4321 gctgctcgag ctttcccgcg actttcatcg gttaaaatgt cttttgtgcg gtcgttattt
     4381 tttaatccgc gatatggatc ttcaaatagt cctaaatcat tttttaaatt taacatccga
     4441 agtaccgctt catctaaaag gttctcggat aatttgcctt cttcaattaa accttttaat
     4501 tcatggatat aacaagtcgt catcatttct aaatcaacgc ctgcttccat cgaaaactgt
     4561 gcagcttctt taggatttct tgctgttccg tgattaatta cttcggcaac agcgccccag
     4621 tcagaaataa gtacaccgtc aaactccatt tcgcctcgta gcacatctcg gttcagccat
     4681 ttgttcattg ttgctggaat cccgtccact acgttaaaag cagtcatgac taatttagct
     4741 ccagcttgta tcgccgcatt gtaagcaggt aaataatttt gatataattc gcgcgtagac
     4801 atattaactg tgttgtattc caacccagcc tccgcagccc cgtatgcagc aaaatgtttg
     4861 acacatgccg ccatctgctc caagttttca tttagtttac tcgcatcacc ttggtaacca
     4921 tctaccattg ctttcccaag ctcactattt aaaaatggat cctcaccagt tgattccatc
     4981 acacgtcccc accgagggtc acgtactaaa tcaagcattg gtgaaaaagt gacatgatgc
     5041 ccatctgcag ttgcttcaag cgccgaaacc tctgccatca ctcgaactgt ctcccggtca
     5101 aaagaacaac caagtgcaag tggaatagga aaaaccgttt tataaccatg tataacatcc
     5161 gccataaaaa caagcggaat tcctaagcga ttcgttttta aataagcttc ttgaatacca
     5221 atcatatcaa gcgccgaact tgatccaagc accgaacccg cattttcagt atgcgcatcc
     5281 gttaatttca tttcttgaag aagcggccct gttagttctg catttttgtt tgtaccttta
     5341 aaaagaaaag gtgaaagttg aagacattga gcgatttttt catctaaggt catttgacta
     5401 actaattctt gtactttttc ttgtttcat
//
