LOCUS       CP001655                1983 bp    DNA     linear   BCT 25-OCT-2017
DEFINITION  Dickeya chrysanthemi Ech1591 chromosome, complete genome.
ACCESSION   CP001655
VERSION     CP001655.1
DBLINK      BioProject: PRJNA31295
            BioSample: SAMN02598480
KEYWORDS    .
SOURCE      Dickeya chrysanthemi Ech1591
  ORGANISM  Dickeya chrysanthemi Ech1591
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Pectobacteriaceae; Dickeya.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Balakrishnan,V., Glasner,J. and Perna,N.T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Complete sequence of Dickeya zeae Ech1591
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Tice,H.,
            Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T.,
            Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
            Ovchinnikova,G., Balakrishnan,V., Glasner,J. and Perna,N.T.
  CONSRTM   US DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2009) US DOE Joint Genome Institute, 2800 Mitchell
            Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT     ##Metadata-START##
            Organism Display Name :: Dickeya zeae Ech1591
            GOLD Stamp ID         :: Gi03523
            Temperature Range     :: Mesophile
            Biotic Relationship   :: Free living
            ##Metadata-END##
            CP001655 was submitted as Dickeya zeae Ech1591, but it is 99.9988%
            identical to the genome from Dickeya chrysanthemi NCPPB 3533 (WGS
            entry AOOJ00000000.1)
            URL -- http://www.jgi.doe.gov
            JGI Project ID: 4085668
            Source DNA and bacteria available from Nicole T. Perna
            (ntperna@wisc.edu)
            Contacts: Nicole T. Perna (ntperna@wisc.edu)
            David Bruce (microbe@cuba.jgi-psf.org)
            Annotation done by JGI-ORNL and JGI-PGF
            Finishing done by JGI-LANL
            Finished microbial genomes have been curated to close all gaps with
            greater than 98% coverage of at least two independent clones. Each
            base pair has a minimum q (quality) value of 30 and the total error
            rate is less than one per 50000.
            The JGI and collaborators endorse the principles for the
            distribution and use of large scale sequencing data adopted by the
            larger genome sequencing community and urge users of this data to
            follow them. it is our intention to publish the work of this
            project in a timely fashion and we welcome collaborative
            interaction on the project and analysis.
            (http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Dickeya chrysanthemi Ech1591"
                     /mol_type="genomic DNA"
                     /strain="Ech1591"
                     /db_xref="taxon:561229"
     gene            complement(1..927)
                     /locus_tag="Dd1591_1964"
     CDS             complement(1..927)
                     /locus_tag="Dd1591_1964"
                     /inference="similar to AA sequence:KEGG:ECA2408"
                     /note="KEGG: eca:ECA2408 pectin acetylesterase"
                     /codon_start=1
                     /transl_table=11
                     /product="GH43_18|CE10"
                     /protein_id="ACT06813.1"
                     /translation="MSVSGFSLAETTFPIWPQGEAPGAITSSVQQQVVERSKDPAWPDR
                     AVTGIRSPEITVYVPDNPNGTALLITPGGSYQRVVLDKEGSDLAPYFTQQGYTLFVMTY
                     RMPADGHQEGADAPLADAQRAIRTLRSHAVQWRIDPQRIGIMGFSAGGHVAASLGTRFA
                     QTVYPAQDEIDHVSARPDFMVLMYPVISMQENIAHAGSRKALMGSHPSEAQIERYSAEK
                     QVSAQTPPTFLVHAIDDPSVSVDNSLVMLSALRENKIPAEIHLFEQGKHGFGIRGTVGL
                     PAAAWPQLLNNWIKSLQLDKKAGESSR"
     gene            complement(1264..1983)
                     /locus_tag="Dd1591_1965"
     CDS             complement(1264..1983)
                     /locus_tag="Dd1591_1965"
                     /inference="protein motif:PFAM:PF06178"
                     /note="PFAM: Oligogalacturonate-specific porin; KEGG:
                     eca:ECA2407 oligogalacturonate-specific porin"
                     /codon_start=1
                     /transl_table=11
                     /product="gnl|TC-DB|Q934G3|1.B.35.1.1"
                     /protein_id="ACT06814.1"
                     /db_xref="InterPro:IPR009331"
                     /translation="MKIKLLTLAVASLISVNALAVSIDYRHEMTDNAKVGHKDRLLISH
                     RFANGFGLSSEVKWAQSGRDGNPNRPFSEQVSNGTEVVASYVYKFNDVFSIEPGFSLDS
                     TSSSNNYRPYLRGRANVTDDLSVALRYRPYFKRNSGNIRNTNGDSTMDKGYTLTGNIDY
                     NFLDVYTLGYELEYKKGTSGETILSDNDDYDITHEVKLSYKWDKNWKPYVALGNVSGSD
                     TTDERQTRYRVGVQYSF"
     sig_peptide     complement(1921..1983)
                     /locus_tag="Dd1591_1965"
                     /note="Signal predicted by SignalP 3.0 HMM (Signal peptide
                     probability 1.000) with cleavage site probability 0.999 at
                     residue 21"
ORIGIN
        1 ttatctgctt gattcccccg cctttttatc caattgcagc gattttatcc agttattcaa
       61 tagctgcggc caggctgcgg ccggcagccc gacggtacca cggataccga aaccatgttt
      121 tccttgttcg aacagatgga tttcagccgg aatcttgttc tcccgcaatg ccgatagcat
      181 taccagactg ttgtctacgg atacggatgg gtcgtcaatc gcatggacta aaaatgtcgg
      241 tggagtttgg gcgctgactt gtttttctgc ggaataacgt tcgatttggg cttcactggg
      301 atgtgaaccc atcaacgcct tgcgggagcc ggcgtgggca atattttcct gcatagagat
      361 aacggggtac atcagcacca taaaatcagg gcgggcgctg acgtggtcga tttcatcctg
      421 agcgggataa acggtttgtg caaaacgggt acccagactg gcggcgacat gcccgccggc
      481 ggagaagccc ataataccga tacgttgtgg gtcaatacgc cactgcacgg catgggaacg
      541 cagcgtacgt atcgcccgtt gagcatcggc cagcggcgca tcggcacctt cctgatggcc
      601 gtcagccggc atacggtagg tcatgacgaa caaggtgtag ccttgttggg taaagtatgg
      661 ggctaaatca ctaccttcct tatccagtac gacgcgttgg taagaaccgc cgggggtaat
      721 taatagcgct gtgccattag ggttgtccgg tacataaacc gtgatttccg ggctgcgaat
      781 gcccgttacg gcgcgatccg gccaggctgg gtctttgctg cgctcgacca cttgctgttg
      841 taccgatgac gtgatggcgc cgggtgcttc accttgcggc catatcggga aggtggtctc
      901 ggcaaggctg aatccactga cagacataat aagtgttcct gcaattatct ttgataatga
      961 cataacagtt tactcatata ttcagggttg atggttgaat gggggtggtc agattaataa
     1021 cactagtatg aaggcggagg agataaaaaa acaggtaaac atttcataga agagaataaa
     1081 atgtttaccc aaagtggcga atcatatgat tcccgatagg ggacatcgac acagaaattt
     1141 aaaaagacga attgatggtt tggttaattt ccgctggata ttaacctgga taataaagat
     1201 tccatattgc agccattttt attatccatt ttgacgcctt gtttcaggcg tcacagacag
     1261 cgattagaag ctatattgca cgcctacacg gtaacgggtc tggcgttcgt cagtagtatc
     1321 agaaccagaa acgttgccga gtgcaacata tggtttccag tttttgtccc acttgtaaga
     1381 caacttcact tcatgggtga tgtcataatc atcgttgtca gaaaggatgg tttcgccgga
     1441 ggtgcctttc ttgtattcca gctcgtaacc gagggtataa acatccagga agttatagtc
     1501 gatattaccg gtcagggtat agcccttgtc cattgtacta tcgccattcg tattcctgat
     1561 atttccgcta ttgcgcttaa agtaagggcg ataacgtaag gcgacagaca aatcatcggt
     1621 cacattagcc cggccgcgaa gataggggcg ataattatta ctggaagatg ttgaatctaa
     1681 agaaaatccc ggttcgatag aaaaaacgtc gttgaattta tacacgtagc tggcgacaac
     1741 ttcggtgccg ttgctgacct gttcgctaaa tggtctgttt gggttaccgt ccctgccgga
     1801 ttgagcccat tttacttcgg aggataatcc aaagccattc gcaaaacggt gagagattaa
     1861 cagacggtct ttatgaccaa ctttagcgtt atccgtcatt tcatgacgat aatcgatgga
     1921 tacagccaga gcattaacgc taatcagaga tgcaacagcc aaagttaata atttaatctt
     1981 cat
//
