LOCUS       NZ_CP022479             6530 bp    DNA     linear   CON 19-MAR-2021
DEFINITION  Faecalibacterium prausnitzii strain A2165 chromosome, complete
            genome.
ACCESSION   NZ_CP022479 REGION: 1869091..1875620
VERSION     NZ_CP022479.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07362387
            Assembly: GCF_002734145.1
KEYWORDS    RefSeq.
SOURCE      Faecalibacterium prausnitzii
  ORGANISM  Faecalibacterium prausnitzii
            Bacteria; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae;
            Faecalibacterium.
REFERENCE   1  (bases 1 to 6530)
  AUTHORS   Benevides,L.J., Burman,S., Martin,R., Robert,V., Thomas,M.,
            Miquel,S., Chain,F., Sokol,H., Bermudez-Humaran,L.G., Morrisson,M.,
            Langella,P., Azevedo,V., Chatel,J.M. and Soares,S.C.
  TITLE     New insights into the diversity of the genus Faecalibacterium
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6530)
  AUTHORS   Benevides,L.J., Martin,R., Miquel,S., Bridonneau,C., Robert,V.,
            Hudault,S., Chain,F., Berteau,O., Azevedo,V., Soares,S.C.,
            Chatel,J.M., Sokol,H., Bermudez-Humaran,L.G., Thomas,M. and
            Langella,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2017) Institute of Biological Sciences, Federal
            University of Minas Gerais, Av. Presidente Antonio Carlos, 6627,
            Belo Horizonte, Minas Gerais 31270-901, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CP022479.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: GATC Biotech algorithm v. FEV-2016
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 395.5x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/19/2021 17:42:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,002
            CDSs (total)                      :: 2,917
            Genes (coding)                    :: 2,797
            CDSs (with protein)               :: 2,797
            Genes (RNA)                       :: 85
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 64 of 120
            Pseudo Genes (incomplete)         :: 54 of 120
            Pseudo Genes (internal stop)      :: 9 of 120
            Pseudo Genes (multiple problems)  :: 6 of 120
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6530
                     /organism="Faecalibacterium prausnitzii"
                     /mol_type="genomic DNA"
                     /strain="A2165"
                     /host="Homo sapiens"
                     /db_xref="taxon:853"
                     /country="France"
                     /collection_date="2016-02-09"
     gene            complement(1..1056)
                     /locus_tag="CG447_RS09250"
                     /old_locus_tag="CG447_09240"
     CDS             complement(1..1056)
                     /locus_tag="CG447_RS09250"
                     /old_locus_tag="CG447_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005945031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="WP_005934838.1"
                     /translation="MTTKVTIQDIANELQLSRNTVSKAINNTGVLADATREKILRKAA
                     EMGYKQFAYLPLFQEDAAKTAAPSILPSDKREIAMLTTRFLNSSHFSSTMLDRFQSEI
                     DHLHSCMTIHRISLIELKEKKLPSSLNIQRTAGIICFEVFDYDYAQMLCDLDVPLLFV
                     DSPVMNMRPPLKADRLYMENRIEIQNAVTHMVQRGKKRISFAGDKNHCQSFFERYMAY
                     RDAVEHFGLTEGLSTCAMPSGQQNYPVSLYETIRRFKTMPDAFVCANDFVAMDLVKAL
                     DELGYSVPDDIWVCGFDDSQEASYFAPRLTSIHIHGQIMGYTAANLLMTRIEEPSLNY
                     RTVYTETNLILRESTGD"
     gene            1414..2361
                     /locus_tag="CG447_RS09255"
                     /old_locus_tag="CG447_09245"
     CDS             1414..2361
                     /locus_tag="CG447_RS09255"
                     /old_locus_tag="CG447_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015564182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="WP_005934836.1"
                     /translation="MKAKTASSETAVLAAERKLHNTWVYIKRHWQLYLLFLLPAVVLT
                     LVFKYAPMGGVLIAFQKYNPFKGIWGSEWVGFKNFTRFMSSPDFQRYLINTLKLSVYG
                     LLWGFPIPILLAFLLNRIESKKIKQKVQLVLYMPNFISVIVLCGIVRVLLSVTGPVNG
                     LLHTSINFMTLPEAFRPIYIISGIWQGAGWASIMYTASLSNASKDLKEAAMIDGANLI
                     QQIMTVEWPAIKDMVVIQFILQAGNIMSIGFEKAYALQTDLNLNTAEIIATYVYKKGL
                     LDGDYSFSTAVGLFNTVVNVILLIAVNKVVAKMNDGKGL"
     gene            2345..3280
                     /locus_tag="CG447_RS09260"
                     /old_locus_tag="CG447_09250"
     CDS             2345..3280
                     /locus_tag="CG447_RS09260"
                     /old_locus_tag="CG447_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005934834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="WP_005934834.1"
                     /translation="MARACKEGFTMAKQKKSKMALYTRQDKIILYCGYALLGLFLLAI
                     IVPMIYIVIASFMDPVTLQNKGISFDFSKWSLDAYQRVVSDKQIWVGFRNAVLYSIIF
                     TIISVAVTMLAAYPMSLPDFKGKTIFNTLFVITMFFSGGLIPTYLLINNLGLLDSMWA
                     VILPGAFSVWNMIIARTYYQGIPRELREAADVDGASEMLYFFKILLPVCMPVVAVLAL
                     WQFVAMWNSYFDAMIYLNSASKQPLQLVLRSILIQSQPESGMIADIQSTAERAKMAEL
                     LKYATIIISSLPLLVMYPFFQKYFDAGIMAGSIKG"
     gene            3357..5030
                     /locus_tag="CG447_RS09265"
                     /old_locus_tag="CG447_09255"
     CDS             3357..5030
                     /locus_tag="CG447_RS09265"
                     /old_locus_tag="CG447_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015564184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="WP_035394668.1"
                     /translation="MKKLISRRNFLKVCALAGSAAALSACGGGKSTGSSNSAAAAVDT
                     TGAVTFPLSEKVTFTGMTSFPVGSESEPNNRTIFKRLEEQTNVHIDWTAIQSDQWNDK
                     ITLNMSNPNTLTDFVFTADFTDSNLLRYADQGVILNLEDYIDNNMPNLQKVFEQYPEY
                     RTMCTDSDGHIWALPWIEQLGSEKTAIQTIGNMSFINTKWLNFLGLSMPTTVDEFEQV
                     LMAFRDNAASIKAEYGIDGDIIPMSCIVNNGDQDPSILINGFGEGYGDADKDRHIAVT
                     NDRKVICAATQQGYRDGLDWLHKLYAEKLIDPECFTQEWSTYVSKGKAGRYGVCFSWD
                     VANIDNLTDWEPLPALTADTRNITPQNGSFTSGFGRGKCVVTAKATNPALVCAWLDQM
                     YAPLQSPQNNWGTYGDAEGFNIFEMSTNDKGEPMLKHAPLGDASPVEVREAQCVGGPL
                     AVLDDYYGVYVTCPDDAQYRLDWIKEIYTPDMNNDYVYPNVFMSNEDTEQVSNLQADL
                     QTYMNTQKADWIMNGTTDAEWNEYLSKLEDYGLSDYLGIMQKYLDAYYA"
     gene            5055..6530
                     /locus_tag="CG447_RS09270"
                     /old_locus_tag="CG447_09260"
     CDS             5055..6530
                     /locus_tag="CG447_RS09270"
                     /old_locus_tag="CG447_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005945017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="WP_005934832.1"
                     /translation="MNDLTLQKARAYEAEHGAAISPAERPAYHMTPYVGWLNDPNGFS
                     YYKGKYHQFYQYNPYDVRWAPMHWGHAVSTDLLHWEYLPCALAPDSPVDNGPGCFSGS
                     ATEMDDGRQLLMYTSVIAEKQPNGEMRDIQTQSIAIGDGLNYEKPACNPVLTQKDLPE
                     GFSRFDFRDPKIWREADGTYSAVTVCRAEDGSGAAALFQSKDGFDWHFVTVLERCNNQ
                     YGKMWECPDFFPLDGKQVLMLGPMEMLPKGEFHNGHNVIAFIGSYDEATHTFTKENVQ
                     LMDGGIDFYATQTTLAPDGRRIMTAWLQTWSDTEDKPQGCKWFGQTICPRELHIKDGR
                     ILQSPVRELDAVHGKRTFHENVTVQSEISLGGIKGRVADLTITVQPGEYRSFTLKLAA
                     DADHHTSLTYDPYTSELTLDRSYAGSRADIVHRRSCKVRSQNGALKLRILLDKNSIEV
                     FANDGEQTMTAWIYTPQSADGITFAADGKATVTAEQFELNL"
ORIGIN      
        1 tcaatctcct gtggattcgc gcaggatcag gttggtttcc gtatagacgg tgcgatagtt
       61 cagcgatggc tcttcgatgc gggtcataag cagattggca gcggtgtagc ccatgatctg
      121 tccatggata tggatcgaag tcagacgggg ggcaaagtag gaagcctcct gactgtcatc
      181 gaaaccgcag acccagatat catcgggaac cgaatacccc agctcatcca atgccttgac
      241 cagatccatg gcaacaaagt cattggcgca gacaaaggca tccggcatcg ttttgaaccg
      301 acggatggtt tcgtacaggg ataccggata gttctgctgt ccagatggca tcgcacaggt
      361 gctcaggccc tctgtcagac caaagtgctc cactgcatcc ctataagcca tataacgctc
      421 aaagaaggac tgacagtggt ttttatcccc cgcaaagctg atgcgttttt tgccgcgctg
      481 gaccatgtgg gtcaccgcat tctggatctc aatgcggttt tccatataaa ggcggtcagc
      541 tttaagagga ggacgcatat tcatcacagg gctgtctaca aacagcagcg gaacatccag
      601 atcgcacaac atctgtgcgt agtcatagtc gaatacttca aagcagatga tgccggctgt
      661 gcgctggatg ttgagagaag atggaagttt tttctctttc agctctatga gagaaatgcg
      721 atgaatggtc atgcagctat gcagatggtc gatttccgac tggaaacgat ccagcatcgt
      781 ggaggaaaag tgagagctgt tcagaaaccg ggtcgtcagc atggcgatct cccgtttgtc
      841 actcggcaga atggaaggcg ctgctgtttt tgcagcgtct tcctgaaaca gcggcagata
      901 ggcgaactgc ttatagccca tttcggcggc tttgcgcagg atcttctccc gtgtggcatc
      961 tgccagcaca ccggtgttgt tgatggcctt tgaaactgtg ttgcgggaaa gctgcagttc
     1021 gtttgcaata tcctgaatgg tgaccttggt tgtcataagt catcctcttt ctttacagta
     1081 tagaggcgga tgttccctct tttatcgata aagtctggtg acggatcttg ttctatgact
     1141 ccagtatagt gcaaatgcac aaattagtca aacgtaaaaa tgcaaatcat cattttgcat
     1201 atttgcgcac tttcgaattt gtgcatctgt acaaatccac agtatttctt gatatatact
     1261 atgaattatc gttgacattc gcttgcttgc gtggtataaa tgaattacag agttttacat
     1321 ttgcacaatc aaagtaaaaa gtgcaagatt caaaggtgca aatgtaaaat gcaaatcaag
     1381 cggcaagcaa atcaaaaagg aggagaatga ttcatgaaag caaagacagc ctcgtcggaa
     1441 acggctgtgc tggcagcaga acgcaagctg cacaacacat gggtctacat caaacggcat
     1501 tggcagcttt acctgttgtt cctgctgcct gctgtggtgc tgacgctggt gttcaagtac
     1561 gctcccatgg gcggtgtgct gatcgcgttc cagaagtaca atcccttcaa aggtatctgg
     1621 ggcagcgagt gggtaggctt caaaaacttt acccgcttca tgtcctcgcc ggatttccag
     1681 cgctatctga tcaacaccct gaagctgagc gtctacggtc tgctgtgggg cttcccgatc
     1741 cccattctgc tggcattcct gctcaaccgt attgagagca agaagatcaa gcagaaggtg
     1801 cagctggtgc tgtatatgcc caacttcatc tcggtcatcg tgctgtgcgg tatcgtccgg
     1861 gtgctgctga gtgtcaccgg tccggtgaac ggcctgcttc acaccagcat caacttcatg
     1921 acgctgccgg aagcgttccg ccccatctac atcatcagcg gcatctggca gggtgccggc
     1981 tgggcatcca tcatgtacac cgcatccctt tctaacgcca gcaaagatct gaaggaagct
     2041 gctatgatcg acggcgcaaa cctgatccag cagatcatga cagtggagtg gcccgccatt
     2101 aaggatatgg tcgttattca gttcatcctg caggcaggca acatcatgag catcggtttt
     2161 gaaaaagcct atgccctgca aaccgacctg aacctgaaca ctgccgagat cattgcaacg
     2221 tacgtttata aaaagggcct gttggacggc gattacagct tctccacggc agtcggtctg
     2281 ttcaacaccg ttgtcaacgt catcctgctg atcgcagtga acaaggtcgt tgccaaaatg
     2341 aacgatggca agggcttgta aggaggggtt taccatggca aaacagaaaa aatcaaaaat
     2401 ggccctctac accagacaag ataagatcat cctgtactgc ggctacgcac ttctgggctt
     2461 gttcctgctg gcgatcatcg ttccgatgat ctacatcgtc atcgcgtcct ttatggaccc
     2521 ggtcactctg caaaacaagg gcatctcctt tgatttcagc aagtggagtc tggatgctta
     2581 ccagcgtgtc gtttcggaca agcagatctg ggtcggcttc aggaacgcag tactttactc
     2641 gatcatcttc accatcatct cggtcgctgt gacgatgctt gccgcttatc ccatgtcgct
     2701 gccggacttc aaaggcaaaa cgatcttcaa caccttgttt gtgatcacga tgtttttcag
     2761 cggcggtctg atccccacct acctgctcat caacaatctg ggtctgctgg attccatgtg
     2821 ggcggtcatt ctgccgggag cattcagcgt gtggaacatg atcattgccc gtacctatta
     2881 tcaaggcatc ccgcgtgagc tgcgcgaagc tgcggatgtg gatggagcca gcgagatgct
     2941 ttacttcttc aagatcctgc tgcccgtctg tatgccggtg gtggcagttc tggccctgtg
     3001 gcagttcgtg gcaatgtgga acagctactt tgacgccatg atctacctga acagcgcatc
     3061 gaagcagccg ctgcagctgg tgctgcgttc catcctgatc cagagccagc cggaatccgg
     3121 catgatcgca gatatccaga gcactgccga acgtgcgaag atggcagagc tgctcaaata
     3181 tgcaaccatt attatttcca gtctgccgct gctggtgatg tatcctttct tccagaagta
     3241 ttttgatgct ggcatcatgg ctggttccat taaaggctga ggatattcca gaattttatg
     3301 agccggtacg ctcatcagct acacgaaaaa agaaacatga aaaaggagaa aataccatga
     3361 aaaagctgat ctctcgccgc aacttcctca aggtctgtgc tctggcgggc tctgctgctg
     3421 ctctgtctgc ctgtggcggc ggcaaatcca ccggcagcag caattctgct gccgcagctg
     3481 tggacacgac cggtgccgtt acatttccgc tgtccgaaaa ggtcaccttt accggtatga
     3541 ccagcttccc tgtgggcagc gaatccgagc cgaacaaccg taccatcttc aagcgtctgg
     3601 aagagcagac caatgtgcac atcgactgga ccgccatcca gtccgaccag tggaacgata
     3661 agatcaccct gaatatgtcc aaccccaaca ccctgacgga ttttgttttt actgctgatt
     3721 ttaccgacag caatctgctg cgctacgcag atcagggtgt catcctcaat ctggaagact
     3781 acattgacaa caatatgccg aatctccaga aggtctttga gcagtacccg gagtaccgca
     3841 ccatgtgtac cgacagcgat ggccacatct gggcactgcc ctggatcgag cagctcggct
     3901 cagaaaagac cgccatccag accattggca acatgagctt catcaatacc aagtggctga
     3961 acttcctcgg tctgtcgatg cccaccacag tggacgagtt tgaacaggtg ctgatggcat
     4021 tccgtgataa cgccgcttct atcaaggcag agtatggcat tgacggcgat atcatcccca
     4081 tgtcctgcat cgtcaacaac ggcgatcagg accccagcat cctcatcaat ggctttggcg
     4141 aaggctacgg cgatgcagac aaagaccgcc atatcgctgt taccaacgac cggaaagtca
     4201 tctgtgccgc cacccagcag ggctaccgtg atggtctgga ctggctgcac aagctgtatg
     4261 ccgagaagct cattgacccg gagtgcttca cgcaggagtg gtccacctat gtttccaagg
     4321 gcaaggctgg ccgctatggt gtctgcttca gctgggatgt tgccaacatt gacaacctga
     4381 ccgactggga gccgctgcct gccctgaccg ccgatacccg gaatatcact ccgcagaacg
     4441 gctctttcac cagcggcttt ggccgcggca agtgcgttgt taccgcaaag gcgacgaatc
     4501 ctgcactggt ttgcgcatgg ctggatcaga tgtacgcgcc cctccagtct cctcagaaca
     4561 actggggtac ttacggcgat gcggaaggct ttaacatttt tgaaatgtcc accaacgata
     4621 agggcgagcc catgctgaag cacgctcctc tgggcgatgc ttctcccgtg gaagtccgtg
     4681 aggcgcagtg tgtcggcggg cctctggcgg ttctggatga ttactatggt gtatacgtta
     4741 cctgcccgga cgatgcacag taccgtctgg actggatcaa ggaaatctac accccggata
     4801 tgaacaacga ttatgtctat cccaatgtct ttatgagcaa cgaggacacc gagcaggtct
     4861 ccaacctgca ggcagatctg cagacctaca tgaatacgca gaaggccgac tggatcatga
     4921 acggcactac ggatgcagag tggaacgaat atctgagcaa gctggaagac tacggcctgt
     4981 ccgactatct gggcattatg cagaaatatc tggatgctta ctacgcataa gaattctttc
     5041 ctttggagga ttccatgaac gatttgactt tacaaaaagc ccgtgcctac gaggccgagc
     5101 acggtgctgc catttccccg gcggaacgcc ctgcttacca catgaccccc tatgtgggct
     5161 ggctgaacga ccccaacggt ttctcttatt acaaagggaa gtatcaccag ttctatcagt
     5221 ataaccccta cgatgtgcgg tgggcgccca tgcactgggg tcacgccgtc agcaccgacc
     5281 tgctgcactg ggagtatctg ccctgtgcgc tggcaccgga ttccccggtg gacaacggcc
     5341 ccggctgctt ctccggctct gccaccgaga tggatgacgg caggcagctg ctgatgtaca
     5401 ccagcgtgat tgcagaaaag cagcccaatg gggagatgcg ggatatccag acccagagca
     5461 ttgccatcgg tgacggtctc aactacgaaa agcctgcctg caacccggtg ctgacccaga
     5521 aagacctgcc ggaaggcttc agcaggttcg acttccggga ccccaagatc tggcgtgagg
     5581 ccgatggcac ctactccgcc gtcaccgtct gccgggccga ggacggcagc ggcgcagcgg
     5641 cactgttcca gagcaaggac ggcttcgact ggcactttgt cacggtgctg gaacgctgca
     5701 acaatcagta cggaaaaatg tgggagtgcc cggacttctt cccgctggat ggcaagcagg
     5761 tcttgatgct gggacccatg gagatgctgc ccaagggcga gttccacaat ggtcacaacg
     5821 tcattgcctt catcggcagc tacgacgaag ccacccacac tttcaccaag gaaaatgtgc
     5881 agctgatgga cggcggcatc gacttctacg ccacccagac cacccttgcc ccggatggcc
     5941 gccggatcat gacggcatgg ctgcagacct ggtcggacac cgaggataag ccccagggct
     6001 gcaagtggtt cgggcagacc atctgccccc gggagctgca tatcaaggat gggcgcattc
     6061 ttcagagccc cgtgcgagag ctggatgccg tccacggtaa gcgcaccttc cacgaaaatg
     6121 tgacggtgca aagcgaaatt tctctgggag gcatcaaggg tcgtgtggcc gacctgacca
     6181 tcacggtgca gcccggcgaa taccgctcct ttaccctgaa gctggccgcc gatgcagacc
     6241 atcacaccag cctgacctac gatccctaca cctccgagct gacgctggat cgcagctatg
     6301 ccggttcccg tgccgacatc gttcaccgcc gcagctgcaa ggtgcgcagc cagaacggtg
     6361 cactcaagct ccgcatcctg ttggataaga acagcatcga agttttcgcc aacgatggtg
     6421 agcagaccat gaccgcatgg atctacaccc cccagtctgc cgatggcatc acctttgccg
     6481 ccgatggcaa agcaactgtt acggcggaac agtttgaact gaatctgtaa
//

