CAZyme Gene Cluster: NC_000913.3|CGC24
CGC gene composition diagram |
Gene composition table |
Substrate predicted by dbCAN-sub |
Substrate predicted by dbCAN-PUL search |
Filtered homologs of dbCAN-PUL hits
CGC gene composition diagram
Gene detail information of NC_000913.3_1712
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_1713
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_1714
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_1715
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_1716
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene composition table
| Protein ID | Type | Start | End | Strand | Signature |
|---|---|---|---|---|---|
| NC_000913.3_1712 | CAZyme | 1817148 | 1818500 | - | GH4|GH4_e24 |
| NC_000913.3_1713 | TF | 1818605 | 1819444 | - | HTH_AraC+HTH_AraC |
| NC_000913.3_1714 | TC | 1819455 | 1819805 | - | 4.A.3.2.1 |
| NC_000913.3_1715 | TC | 1819856 | 1821214 | - | 4.A.3.2.1 |
| NC_000913.3_1716 | TC | 1821299 | 1821619 | - | 4.A.3.2.1 |
Substrate predicted by best dbCAN-PUL hit is chitin download this fig
All filtered homologs of dbCAN-PUL hits
| qseqid | sseqid | PULID | pident | length | mismatch | gapopen | qstart | qend | sstart | send | evalue | bitscore | qlen | slen |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000913.3_1712|CAZyme|GH4;GH4_e24 | PUL0381_5|CAZyme|GH4 | PUL0381 | 44.828 | 435 | 235 | 4 | 5 | 439 | 6 | 435 | 1.16e-130 | 383.0 | 451 | 440 |
| NC_000913.3_1714|TC | PUL0381_4|TC | PUL0381 | 52.525 | 99 | 47 | 0 | 16 | 114 | 2 | 100 | 1.12e-32 | 108.0 | 117 | 111 |
| NC_000913.3_1715|TC | PUL0381_3|TC | PUL0381 | 30.022 | 453 | 288 | 12 | 4 | 451 | 7 | 435 | 2.83e-50 | 175.0 | 453 | 443 |
| NC_000913.3_1716|TC | PUL0381_2|TC | PUL0381 | 39.394 | 99 | 58 | 1 | 4 | 100 | 2 | 100 | 6.6e-14 | 60.5 | 107 | 101 |
| NC_000913.3_1712|CAZyme|GH4;GH4_e24 | PUL0019_5|CAZyme|GH4 | PUL0019 | 53.499 | 443 | 203 | 3 | 1 | 443 | 1 | 440 | 3.11e-168 | 478.0 | 451 | 442 |
| NC_000913.3_1714|TC | PUL0019_4|TC | PUL0019 | 40.000 | 100 | 60 | 0 | 15 | 114 | 3 | 102 | 2.1e-21 | 80.5 | 117 | 110 |
| NC_000913.3_1715|TC | PUL0019_3|TC | PUL0019 | 32.353 | 476 | 258 | 14 | 1 | 448 | 1 | 440 | 1.5e-65 | 215.0 | 453 | 452 |
| NC_000913.3_1716|TC | PUL0019_2|TC | PUL0019 | 46.939 | 98 | 42 | 3 | 5 | 96 | 2 | 95 | 1.98e-20 | 77.4 | 107 | 102 |
| NC_000913.3_1712|CAZyme|GH4;GH4_e24 | PUL0571_7|CAZyme|GH4 | PUL0571 | 90.444 | 450 | 43 | 0 | 1 | 450 | 1 | 450 | 0.0 | 854.0 | 451 | 451 |
| NC_000913.3_1713|TF | PUL0571_6|TF | PUL0571 | 85.663 | 279 | 40 | 0 | 1 | 279 | 2 | 280 | 0.0 | 507.0 | 280 | 280 |
| NC_000913.3_1714|TC | PUL0571_5|TC | PUL0571 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 1.5e-69 | 202.0 | 117 | 115 |
| NC_000913.3_1715|TC | PUL0571_4|TC | PUL0571 | 94.690 | 452 | 24 | 0 | 1 | 452 | 1 | 452 | 0.0 | 856.0 | 453 | 452 |
| NC_000913.3_1716|TC | PUL0571_3|TC | PUL0571 | 96.226 | 106 | 4 | 0 | 1 | 106 | 1 | 106 | 2.81e-70 | 203.0 | 107 | 106 |
| NC_000913.3_1712|CAZyme|GH4;GH4_e24 | PUL0100_2|CAZyme|GH4 | PUL0100 | 100.000 | 450 | 0 | 0 | 1 | 450 | 1 | 450 | 0.0 | 929.0 | 451 | 450 |
| NC_000913.3_1713|TF | PUL0100_3|TF | PUL0100 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 578.0 | 280 | 279 |
| NC_000913.3_1714|TC | PUL0100_4|TC | PUL0100 | 100.000 | 116 | 0 | 0 | 1 | 116 | 1 | 116 | 9.12e-81 | 230.0 | 117 | 116 |
| NC_000913.3_1715|TC | PUL0100_5|TC | PUL0100 | 100.000 | 452 | 0 | 0 | 1 | 452 | 1 | 452 | 0.0 | 888.0 | 453 | 452 |
| NC_000913.3_1716|TC | PUL0100_6|TC | PUL0100 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 4.55e-74 | 213.0 | 107 | 106 |