CAZyme Gene Cluster: NC_000913.3|CGC47
CGC gene composition diagram |
Gene composition table |
Substrate predicted by dbCAN-sub |
Substrate predicted by dbCAN-PUL search |
Filtered homologs of dbCAN-PUL hits
CGC gene composition diagram
Gene detail information of NC_000913.3_3356
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3357
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3358
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3359
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3360
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3361
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3362
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene detail information of NC_000913.3_3363
NCBI Blastp with this gene.
Protein sequence: copy AA seq
Gene composition table
| Protein ID | Type | Start | End | Strand | Signature |
|---|---|---|---|---|---|
| NC_000913.3_3356 | CAZyme | 3564134 | 3566581 | - | GT35_e0|GT35 |
| NC_000913.3_3357 | CAZyme | 3566600 | 3568033 | - | GT5_e31|GT5 |
| NC_000913.3_3358 | null | 3568033 | 3569328 | - | |
| NC_000913.3_3359 | CAZyme | 3569346 | 3571319 | - | GH13_11|CBM48_e3|CBM48|GH13_e48 |
| NC_000913.3_3360 | CAZyme | 3571316 | 3573502 | - | GH13_e200|CBM48_e2|GH13_9|CBM48 |
| NC_000913.3_3361 | null | 3573775 | 3574878 | - | |
| NC_000913.3_3362 | TC | 3575071 | 3575664 | + | 2.A.95.1.5 |
| NC_000913.3_3363 | TC | 3575721 | 3577061 | - | 2.A.8.1.8 |
Substrate predicted by best dbCAN-PUL hit is glycogen download this fig
All filtered homologs of dbCAN-PUL hits
| qseqid | sseqid | PULID | pident | length | mismatch | gapopen | qstart | qend | sstart | send | evalue | bitscore | qlen | slen |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000913.3_3356|CAZyme|GT35_e0;GT35 | PUL0267_6|CAZyme|GT35 | PUL0267 | 43.583 | 787 | 422 | 10 | 36 | 815 | 27 | 798 | 0.0 | 651.0 | 816 | 803 |
| NC_000913.3_3357|CAZyme|GT5_e31;GT5 | PUL0267_5|CAZyme|GT5 | PUL0267 | 33.811 | 488 | 291 | 9 | 1 | 473 | 1 | 471 | 2.02e-94 | 292.0 | 478 | 476 |
| NC_000913.3_3358|null | PUL0267_3|CDS | PUL0267 | 38.482 | 382 | 210 | 6 | 21 | 401 | 6 | 363 | 2.28e-87 | 269.0 | 432 | 381 |
| NC_000913.3_3360|CAZyme|GH13_e200;CBM48_e2;GH13_9;CBM48 | PUL0267_2|CAZyme|GH13_9;CBM48;GH13 | PUL0267 | 39.610 | 616 | 358 | 7 | 113 | 723 | 14 | 620 | 5.35e-153 | 457.0 | 729 | 638 |
| NC_000913.3_3356|CAZyme|GT35_e0;GT35 | PUL0058_5|CAZyme|GT35 | PUL0058 | 44.025 | 795 | 428 | 5 | 24 | 813 | 15 | 797 | 0.0 | 653.0 | 816 | 798 |
| NC_000913.3_3357|CAZyme|GT5_e31;GT5 | PUL0058_4|CAZyme|GT5 | PUL0058 | 36.864 | 491 | 273 | 11 | 1 | 473 | 1 | 472 | 5.14e-98 | 301.0 | 478 | 484 |
| NC_000913.3_3358|null | PUL0058_2|CDS | PUL0058 | 41.235 | 405 | 204 | 8 | 21 | 424 | 6 | 377 | 7.91e-99 | 298.0 | 432 | 380 |
| NC_000913.3_3360|CAZyme|GH13_e200;CBM48_e2;GH13_9;CBM48 | PUL0058_1|CAZyme|GH13;CBM48;GH13_9 | PUL0058 | 43.019 | 616 | 329 | 7 | 109 | 717 | 10 | 610 | 2.31e-173 | 509.0 | 729 | 627 |
Substrate predicted by dbCAN-sub is glycogen,sucrose
| Protein ID | dbCAN-sub subfam | CAZyme substrate | EC number |
|---|---|---|---|
| NC_000913.3_3356 | GT35_e0 | 2.4.1.1 | |
| NC_000913.3_3357 | GT5_e31 | 2.4.1.21 | |
| NC_000913.3_3358 | |||
| NC_000913.3_3359 | CBM48_e3|GH13_e48 | glycogen,sucrose,starch | 2.4.1.25,3.2.1.68,3.2.1.- |
| NC_000913.3_3360 | CBM48_e2|GH13_e200 | glycogen,sucrose,alpha-glucan | 2.4.1.18 |
| NC_000913.3_3361 | |||
| NC_000913.3_3362 | |||
| NC_000913.3_3363 |