CAZyme Gene Cluster: NC_000913.3|CGC54

CGC gene composition diagram | Gene composition table | Substrate predicted by dbCAN-sub |  Substrate predicted by dbCAN-PUL search  |  Filtered homologs of dbCAN-PUL hits  

CGC gene composition diagram

Gene composition table

Protein ID Type Start End Strand Signature
NC_000913.3_3608 TC 3853922 3855106 + 2.A.1.2.9
NC_000913.3_3609 null 3855114 3855611 -
NC_000913.3_3610 null 3855608 3855970 -
NC_000913.3_3611 TC 3855960 3856307 - 9.B.51.1.1
NC_000913.3_3612 null 3856415 3856864 +
NC_000913.3_3613 null 3856911 3858404 -
NC_000913.3_3614 TC 3858401 3860116 - 2.A.21.3.21
NC_000913.3_3615 TF 3860283 3861176 + HTH_AraC+HTH_AraC
NC_000913.3_3616 null 3861173 3861349 -
NC_000913.3_3617 CAZyme 3861349 3861987 - GH4|GH4_e4
NC_000913.3_3618 TC 3861987 3862472 - 4.A.1.1.10
NC_000913.3_3619 TC 3862497 3863603 - 4.A.1.1.10
NC_000913.3_3620 TF 3863899 3864615 + GntR
NC_000913.3_3621 TC 3864612 3866273 - 2.A.81.1.5

Substrate predicted by best dbCAN-PUL hit is starch download this fig


All filtered homologs of dbCAN-PUL hits

qseqid sseqid PULID pident length mismatch gapopen qstart qend sstart send evalue bitscore qlen slen
NC_000913.3_3616|null PUL0349_1|CAZyme|GH4 PUL0349 74.138 58 15 0 1 58 383 440 5.2e-25 93.2 59 440
NC_000913.3_3617|CAZyme|GH4;GH4_e4 PUL0349_1|CAZyme|GH4 PUL0349 81.159 207 37 1 1 205 1 207 6.53e-128 366.0 213 440
NC_000913.3_3618|TC PUL0349_3|TC PUL0349 52.941 153 65 3 1 146 374 526 3.06e-46 156.0 162 529
NC_000913.3_3619|TC PUL0349_3|TC PUL0349 57.453 369 152 3 1 368 1 365 2.9e-147 425.0 369 529