CAZyme Gene Cluster: NC_000913.3|CGC57

CGC gene composition diagram | Gene composition table | Substrate predicted by dbCAN-sub |  Substrate predicted by dbCAN-PUL search  |  Filtered homologs of dbCAN-PUL hits  

CGC gene composition diagram

Gene composition table

Protein ID Type Start End Strand Signature
NC_000913.3_3792 TC 4062247 4063512 + 2.A.1.52.1
NC_000913.3_3793 TC 4063603 4064295 - 1.B.35.2.2
NC_000913.3_3794 TC 4064363 4065766 - 2.A.2.3.15
NC_000913.3_3795 TC 4065809 4067194 - 2.A.2.3.9
NC_000913.3_3796 CAZyme 4067240 4069276 - GH31_e85|GH31
NC_000913.3_3797 TC 4069475 4070401 - 2.A.86.1.6

Substrate predicted by best dbCAN-PUL hit is human milk oligosaccharide download this fig


All filtered homologs of dbCAN-PUL hits

qseqid sseqid PULID pident length mismatch gapopen qstart qend sstart send evalue bitscore qlen slen
NC_000913.3_3793|TC PUL0291_1|TC PUL0291 100.000 230 0 0 1 230 1 230 1.99e-174 476.0 231 230
NC_000913.3_3794|TC PUL0291_2|TC PUL0291 100.000 467 0 0 1 467 1 467 0.0 953.0 468 467
NC_000913.3_3794|TC PUL0291_3|TC PUL0291 64.693 456 158 2 1 453 4 459 0.0 623.0 468 461
NC_000913.3_3795|TC PUL0291_3|TC PUL0291 100.000 461 0 0 1 461 1 461 0.0 934.0 462 461
NC_000913.3_3795|TC PUL0291_2|TC PUL0291 64.693 456 158 2 4 459 1 453 0.0 623.0 462 467
NC_000913.3_3796|CAZyme|GH31_e85;GH31 PUL0291_4|CAZyme|GH31 PUL0291 100.000 678 0 0 1 678 1 678 0.0 1419.0 679 678
NC_000913.3_3797|TC PUL0291_5|CDS PUL0291 100.000 300 0 0 9 308 1 300 0.0 626.0 309 300