logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000287_01879

You are here: Home > Sequence: MGYG000000287_01879

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Robinsoniella sp900539655
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Robinsoniella; Robinsoniella sp900539655
CAZyme ID MGYG000000287_01879
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2183 MGYG000000287_20|CGC2 241305.2 4.7008
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000287 7249439 MAG Sweden Europe
Gene Location Start: 67908;  End: 74459  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000287_01879.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH95 1042 1756 9e-49 0.8407202216066482
CBM32 321 444 1.8e-16 0.8951612903225806
CBM32 480 606 8.3e-16 0.7419354838709677

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
sd00036 LRR_3 9.99e-14 2072 2181 14 113
leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.
pfam13306 LRR_5 2.95e-13 2071 2146 10 74
Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
pfam00754 F5_F8_type_C 7.11e-12 466 607 1 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam13306 LRR_5 2.88e-11 2072 2146 34 119
Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
cd00057 FA58C 1.32e-10 486 597 18 126
Substituted updates: Jan 31, 2002

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBW84561.1 3.92e-133 6 460 2 464
AHI57221.1 3.92e-133 6 460 2 464
QDA73308.1 3.92e-133 6 460 2 464
SNV33806.1 3.92e-133 6 460 2 464
SNV77763.1 3.92e-133 6 460 2 464

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2EAD_A 1.47e-08 1266 1798 370 894
ChainA, Alpha-fucosidase [Bifidobacterium bifidum],2EAD_B Chain B, Alpha-fucosidase [Bifidobacterium bifidum]
2EAB_A 5.69e-08 1266 1798 370 894
Crystalstructure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAB_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form) [Bifidobacterium bifidum],2EAC_A Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum],2EAC_B Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin [Bifidobacterium bifidum]
2EAE_A 9.78e-08 1266 1798 369 893
ChainA, Alpha-fucosidase [Bifidobacterium bifidum]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000878 0.813474 0.184283 0.000793 0.000308 0.000246

TMHMM  Annotations      download full data without filtering help

start end
12 31