CAZyme Information: MGYG000001423_02558

Basic Information

• Species: Clostridium celatum
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium celatum
• CAZyme ID: MGYG000001423_02558
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000001423_70|CGC1	81291.64	4.5403

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001423	3553421	Isolate	not provided	not provided

• Gene Location: Start: 39670; End: 41736 Strand: -

Full Sequence      

MRREYINYPSDLPIKITYAKITNYPIHWHNSIEILYVIKGSLNISIDTDSFTINEKEVEI
INSDESHMLHSDTDTRVLIFNIDPYFFEKYYKDINNIFFYTNSNDNEDQSGDEYDELKTI
LSQILCEYVQKLEDYDEEIEEQLITLLYHLINNFHYLTHEKEELKEKTEQLDRYHRISKY
IFNNYNNNITLQDIAKKEFLSPHYLSHEIKYATGYSFTDLINLTRIEESIKLLLDSDLSI
SDISDEIGFSHTRYYNKNFKYYYNCTPLQYRKKHTLSEKEYEASKILEELPLSDALDFLS
YSLENYSRFNFENKLWKIHIDMDEEIETLKPEFKNAINLGEAFDLLIEDNKDILEEIQEE
IHFEYGRLEKMFHSDMGVFLDSDFYNWNKAKGVLEFLSDINLKPLILLDNLNYSVEKYIN
IITSFLNYFEDVDLVDTDDFQFQFSSDISQDIKDEITNFILSNYNLTVISENFNVSSNLN
PIYDTAYMLPYIIHNSIFKKNSLNFLKAFDVLEKAINITNEVFIGAPGIVNDMGIRKPSY
YAYYLLSKLSENIVSLDDGYIVTKSLDYYAILLYSHNEDIYSLASYEDIYQKGAVKKSFE
RKYSLNIVNIKSSTRIITYEVNEFIGSSYNYWLSMGSPDRLSKEEKEILYKASYPKIEFK
YSKKSSVLNIITELKGYGAKLIILKPAK

Enzyme Prediction     

No EC number prediction in MGYG000001423_02558.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	467	641	4e-16	0.3874709976798144

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	3.59e-14	171	274	19	122	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	3.26e-13	189	271	2	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	7.93e-11	194	273	1	81	Helix-turn-helix domain.
COG3664	XynB	5.96e-09	415	658	155	397	Beta-xylosidase [Carbohydrate transport and metabolism].
COG4753	YesN	1.35e-06	116	274	309	474	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATD56640.1	0.0	1	688	1	689
QBJ75981.1	0.0	1	688	1	689
SLK21057.1	0.0	1	688	1	689
ATD55683.1	0.0	1	688	1	689
AYE35030.1	0.0	1	688	1	689

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	5.04e-09	190	271	21	102	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P96660	2.33e-13	25	272	39	288	Uncharacterized HTH-type transcriptional regulator YdeC OS=Bacillus subtilis (strain 168) OX=224308 GN=ydeC PE=4 SV=1
Q5HJR8	3.98e-11	30	312	21	300	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	1.20e-10	30	312	21	300	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q99XB1	1.58e-10	30	317	21	305	Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882	1.58e-10	30	317	21	305	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000059	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001423_02558.