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CAZyme Information: MGYG000002126_00847

You are here: Home > Sequence: MGYG000002126_00847

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA1390 sp900764045
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; UBA1390; UBA1390; UBA1390 sp900764045
CAZyme ID MGYG000002126_00847
CAZy Family GH28
CAZyme Description Endo-polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
431 47840.32 5.3039
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002126 2317686 MAG Mongolia Asia
Gene Location Start: 1330;  End: 2625  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002126_00847.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 21 411 8.9e-77 0.9661538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.13e-59 3 308 88 405
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 1.02e-25 2 419 41 401
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 1.60e-21 93 314 54 256
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 2.17e-19 91 312 112 302
Probable polygalacturonase At3g15720
PLN03010 PLN03010 4.39e-17 1 308 50 317
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ANW98240.1 2.25e-162 5 414 12 430
AGC67830.1 2.25e-162 5 414 12 430
AGI38870.1 2.25e-162 5 414 12 430
ANX00772.1 3.18e-162 5 414 12 430
AVV39224.1 4.33e-136 1 412 7 415

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 5.36e-43 1 410 31 429
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 2.97e-42 2 410 49 446
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 1.72e-23 14 412 26 374
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 1.95e-16 2 393 161 568
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.82e-36 1 391 66 424
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P26509 1.27e-22 14 412 52 400
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P18192 1.46e-21 14 412 52 400
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P15922 1.02e-19 3 411 157 579
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q9LW07 3.83e-18 91 312 112 302
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000054 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002126_00847.