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CAZyme Information: MGYG000002133_00996

You are here: Home > Sequence: MGYG000002133_00996

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp000436915
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp000436915
CAZyme ID MGYG000002133_00996
CAZy Family PL11
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1522 164368.67 5.3084
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002133 2840923 MAG United States North America
Gene Location Start: 136;  End: 4704  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002133_00996.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL11 22 644 3.6e-180 0.9965217391304347

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd10318 RGL11 6.82e-109 26 630 3 564
Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370 RGI_lyase 6.26e-13 27 103 6 76
Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK15319 PRK15319 7.08e-09 644 1508 313 1185
fibronectin-binding autotransporter adhesin ShdA.
PRK09752 PRK09752 5.08e-05 980 1415 321 746
AIDA-I family autotransporter YfaL.
PRK15319 PRK15319 3.40e-04 721 1018 998 1265
fibronectin-binding autotransporter adhesin ShdA.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGB28972.1 0.0 1 1518 1 1509
AKC82987.1 6.75e-147 2 1311 6 1288
QJE98692.1 1.87e-143 15 1310 18 1291
QUE49325.1 1.83e-134 8 1310 13 1317
ACL74801.1 6.67e-98 25 677 42 664

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2Z8R_A 3.67e-69 20 642 1 578
Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A 1.38e-68 16 644 3 587
Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A 1.06e-64 21 644 5 601
Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O31526 1.54e-68 9 642 24 615
Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527 4.93e-64 21 644 5 601
Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1
A0A0H3GGE2 6.41e-13 806 1104 1201 1537
Adhesin BmaC autotransporter OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bmaC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000510 0.998675 0.000300 0.000176 0.000157 0.000142

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002133_00996.