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CAZyme Information: MGYG000002467_01882

You are here: Home > Sequence: MGYG000002467_01882

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia frederiksenii_C
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii_C
CAZyme ID MGYG000002467_01882
CAZy Family AA6
CAZyme Description NAD(P)H dehydrogenase (quinone)
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
199 MGYG000002467_3|CGC2 20787.53 7.4614
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002467 4928795 Isolate Finland Europe
Gene Location Start: 200974;  End: 201573  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002467_01882.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA6 3 196 9.9e-83 0.9948717948717949

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK03767 PRK03767 9.45e-135 1 198 1 199
NAD(P)H:quinone oxidoreductase; Provisional
TIGR01755 flav_wrbA 6.54e-113 2 197 1 197
NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR (SP:P03032) are not detected. [Energy metabolism, Electron transport]
COG0655 WrbA 1.32e-60 1 198 3 206
Multimeric flavodoxin WrbA [Energy production and conversion].
COG0426 NorV 4.59e-12 2 125 247 349
Flavorubredoxin [Energy production and conversion].
COG0716 FldA 2.13e-10 1 184 1 141
Flavodoxin [Energy production and conversion].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CDM84515.1 1.83e-63 3 198 4 200
QIH44907.1 1.12e-62 3 198 4 201
CAG1846839.1 1.49e-62 1 198 2 200
BAS94766.1 2.24e-62 3 198 4 200
CAG7892556.1 3.08e-62 3 198 4 200

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2R96_A 9.33e-118 1 197 1 196
Crystalstructure of E. coli WrbA in complex with FMN [Escherichia coli],2R96_C Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2R97_A Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2R97_C Crystal structure of E. coli WrbA in complex with FMN [Escherichia coli],2RG1_A Crystal structure of E. coli WrbA apoprotein [Escherichia coli],2RG1_B Crystal structure of E. coli WrbA apoprotein [Escherichia coli],3B6I_A WrbA from Escherichia coli, native structure [Escherichia coli K-12],3B6I_B WrbA from Escherichia coli, native structure [Escherichia coli K-12],3B6J_A WrbA from Escherichia coli, NADH complex [Escherichia coli K-12],3B6J_B WrbA from Escherichia coli, NADH complex [Escherichia coli K-12],3B6K_A WrbA from Escherichia coli, Benzoquinone complex [Escherichia coli K-12],3B6K_B WrbA from Escherichia coli, Benzoquinone complex [Escherichia coli K-12],3B6M_A WrbA from Escherichia coli, second crystal form [Escherichia coli K-12],3B6M_B WrbA from Escherichia coli, second crystal form [Escherichia coli K-12]
4DY4_A 5.20e-117 2 197 1 195
Highresolution structure of E.coli WrbA with FMN [Escherichia coli APEC O1],4DY4_C High resolution structure of E.coli WrbA with FMN [Escherichia coli APEC O1]
3ZHO_A 4.27e-116 2 197 1 195
X-raystructure of E.coli Wrba in complex with FMN at 1.2 A resolution [Escherichia coli],3ZHO_B X-ray structure of E.coli Wrba in complex with FMN at 1.2 A resolution [Escherichia coli],4YQE_A Crystal structure of E. coli WrbA in complex with benzoquinone [Escherichia coli K-12],4YQE_B Crystal structure of E. coli WrbA in complex with benzoquinone [Escherichia coli K-12],5F12_A WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE) [Escherichia coli K-12],5F12_B WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE) [Escherichia coli K-12]
4LA4_A 1.39e-72 3 197 4 203
Crystalstructure of native PnpB [Pseudomonas sp. WBC-3],4LA4_B Crystal structure of native PnpB [Pseudomonas sp. WBC-3],4LAF_A Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_B Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_C Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3],4LAF_D Crystal structure of PnpB complex with FMN [Pseudomonas sp. WBC-3]
5F4B_A 2.74e-71 1 197 4 200
Structureof B. abortus WrbA-related protein A (WrpA) [Brucella abortus 2308],5F4B_B Structure of B. abortus WrbA-related protein A (WrpA) [Brucella abortus 2308]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q1C8L9 4.68e-136 1 198 1 198
NAD(P)H dehydrogenase (quinone) OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=YPA_1236 PE=3 SV=1
B2K198 4.68e-136 1 198 1 198
NAD(P)H dehydrogenase (quinone) OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=YPTS_1860 PE=3 SV=1
A1JMU2 4.68e-136 1 197 1 197
NAD(P)H dehydrogenase (quinone) OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) OX=393305 GN=YE1941 PE=3 SV=1
Q8ZF61 4.68e-136 1 198 1 198
NAD(P)H dehydrogenase (quinone) OS=Yersinia pestis OX=632 GN=YPO1857 PE=3 SV=1
A4TK49 4.68e-136 1 198 1 198
NAD(P)H dehydrogenase (quinone) OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=YPDSF_1268 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000060 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002467_01882.