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CAZyme Information: MGYG000002517_00942

You are here: Home > Sequence: MGYG000002517_00942

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Roseburia hominis
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia; Roseburia hominis
CAZyme ID MGYG000002517_00942
CAZy Family GH73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
761 MGYG000002517_1|CGC12 80751.17 4.6045
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002517 3592125 Isolate United Kingdom Europe
Gene Location Start: 1025898;  End: 1028183  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002517_00942.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4193 LytD 6.32e-20 295 512 45 245
Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].
cd14256 Dockerin_I 3.96e-15 698 754 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam00404 Dockerin_1 5.12e-11 699 754 1 56
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.
pfam08239 SH3_3 1.38e-06 48 104 1 54
Bacterial SH3 domain.
cd14254 Dockerin_II 3.20e-06 699 754 1 54
Type II dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II dockerins, which are responsible for mediating attachment of the cellulosome complex to the bacterial cell wall.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEN96074.1 0.0 1 761 1 761
CBK92679.1 6.61e-184 8 737 3 764
ACR76042.1 1.65e-181 8 737 3 764
CBK91761.1 1.65e-181 8 737 3 764
ACR71571.1 3.72e-114 147 734 64 664

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6FXO_A 4.90e-13 298 512 37 244
ChainA, Bifunctional autolysin [Staphylococcus aureus subsp. aureus Mu50]
6FXP_A 6.24e-12 270 513 21 247
ChainA, Uncharacterized protein [Staphylococcus aureus subsp. aureus Mu50],6FXP_B Chain B, Uncharacterized protein [Staphylococcus aureus subsp. aureus Mu50]
6U0O_B 1.06e-11 270 513 51 277
ChainB, LYZ2 domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325]
5WQW_A 1.66e-08 310 511 51 269
X-raystructure of catalytic domain of autolysin from Clostridium perfringens [Clostridium perfringens str. 13]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8CPQ1 8.16e-16 298 512 1128 1335
Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=atl PE=3 SV=1
O33635 1.85e-15 298 512 1128 1335
Bifunctional autolysin OS=Staphylococcus epidermidis OX=1282 GN=atl PE=1 SV=1
Q5HQB9 1.85e-15 298 512 1128 1335
Bifunctional autolysin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=atl PE=3 SV=1
Q931U5 3.39e-11 298 512 1041 1248
Bifunctional autolysin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=atl PE=1 SV=2
Q99V41 3.39e-11 298 512 1041 1248
Bifunctional autolysin OS=Staphylococcus aureus (strain N315) OX=158879 GN=atl PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.018976 0.940652 0.024914 0.014629 0.000504 0.000291

TMHMM  Annotations      download full data without filtering help

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