CAZyme Information: MGYG000002525_01821

Basic Information

• Species: Yersinia intermedia
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia
• CAZyme ID: MGYG000002525_01821
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
623	MGYG000002525_6|CGC2	69158.33	7.6527

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002525	5023222	Isolate	Finland	Europe

• Gene Location: Start: 66339; End: 68210 Strand: +

Full Sequence      

MKKIIPAILLFSTCTYADVIPDSQLKKMWLSPQFSAEKTLSKMSLEEKIGQILMVDIRSW
SNADNSDKTAFIEINETVSKMIHDYHLGSIILFRENLIDTPQTVELINNIQRARSNLPLF
ISTDQEGGYVTRLRVGTEMPGNMALGATGSSKLAQQAGSIHGYELSSLGFNFNFGPVVDV
NNNQNNPVIGVRSYSNDPVLVGELARSYINGIHKSNVLTSLKHFPGHGNVTSDTHFALPT
VNIDKAAWQQVELKPFVEVMPVTDAIMTAHVVVPALDNSMLTNTKGEKIGTPATLSKPIL
TDILRNELKYDGLILTDAMDMGAITSNFDRNWSIKQAIMAGNDIVLMPIEIKNSTSIEQL
NALYGYLKAEAAKDPALKLRIEDAAQRVIYTKLNKRISPEPHDIARAQRVVASKNHKDIE
NFISEQAITLIKNDNVLPYKVKSQNKIMVFSDEKPRNELITKHLDDIANEFQVNFAVKNQ
VIKLDKDNVSAEDIAKQIKDQDIIILATYNLKLNPINAQRIIDEANKANIPLVVISSRNP
YDIAYLSGVKANIAIYGITGFDVTNNVRNSLETNIRSGLRTLFKGSKGRLDVLAEPHGKL
PVDIRTPDNSQILYPRGYGLTTL

Enzyme Prediction     

No EC number prediction in MGYG000002525_01821.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	112	347	2.8e-62	0.9814814814814815

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	1.83e-87	43	451	1	361	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	5.41e-77	44	389	1	314	Glycosyl hydrolase family 3 N terminal domain.
PRK05337	PRK05337	1.57e-38	88	347	27	279	beta-hexosaminidase; Provisional
PRK15098	PRK15098	2.00e-07	40	325	42	292	beta-glucosidase BglX.
pfam13460	NAD_binding_10	0.002	456	537	26	97	NAD(P)H-binding.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVL37276.1	0.0	1	623	5	627
ARB83506.1	0.0	1	623	5	627
AJJ19713.1	0.0	1	623	1	623
VDZ60251.1	0.0	1	623	1	623
QGR67966.1	0.0	1	623	5	627

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	6.09e-120	1	620	1	634	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.27e-118	36	620	9	608	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	3.11e-118	36	620	39	638	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	9.61e-74	43	556	11	503	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
4ZM6_A	9.00e-60	44	559	8	502	Aunique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain GH3 beta-N-acetylglucosaminidase [Rhizomucor miehei CAU432],4ZM6_B A unique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain GH3 beta-N-acetylglucosaminidase [Rhizomucor miehei CAU432]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	3.34e-119	1	620	1	634	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	7.62e-76	35	454	6	440	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7WUL3	8.56e-35	39	450	22	409	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
Q02PG9	8.61e-32	87	347	27	274	Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=nagZ PE=3 SV=1
B7UYS5	8.61e-32	87	347	27	274	Beta-hexosaminidase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=nagZ PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001094	0.735085	0.263047	0.000274	0.000257	0.000236

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002525_01821.